CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 6
peroxisome 1
mitochondrion 1
unclear 1
plastid 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory, unclear
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory, unclear
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97204
KRG97393
KRH06447
KRH31520
KRH47890
KRH65384
KRH68927
KRH76090
KRH76164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18150.1	KRG97393	AT1G27300.1	21798944
AT5G18150.1	KRH31520	AT1G27300.1	21798944
AT5G18150.1	KRH76090	AT1G27300.1	21798944
AT5G18150.1	KRG97204	AT2G46550.1	21798944
AT5G18150.1	KRH06447	AT2G46550.1	21798944
AT5G18150.1	KRH47890	AT2G46550.1	21798944
AT5G18150.1	KRH68927	AT2G46550.1	21798944
AT5G18150.1	KRH65384	AT3G60600.1	21798944
AT5G18150.1	KRH76164	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08496	Soybean	extracellular	93.02	91.95
Bra023476.1-P	Field mustard	extracellular	55.81	64.86
CDX85592	Canola	extracellular	54.65	63.51
Bra023477.1-P	Field mustard	extracellular	54.65	63.51
CDY53255	Canola	extracellular	55.81	60.76
AT5G18150.1	Thale cress	extracellular	53.49	60.53
VIT_08s0007g07390.t01	Wine grape	extracellular	61.63	59.55
CDY38491	Canola	extracellular	53.49	58.97
Bra006442.1-P	Field mustard	extracellular	55.81	58.54
KRG94827	Soybean	endoplasmic reticulum, extracellular	54.65	58.02
VIT_11s0149g00310.t01	Wine grape	extracellular	59.3	57.95
CDX78780	Canola	extracellular	55.81	57.83
AT5G14602.1	Thale cress	extracellular	53.49	57.5
KRH06709	Soybean	endoplasmic reticulum, extracellular	58.14	57.47
Bra002138.1-P	Field mustard	extracellular	54.65	57.32
CDX91042	Canola	extracellular	51.16	57.14
CDX70798	Canola	extracellular	54.65	56.63
CDY25454	Canola	extracellular	53.49	56.1
GSMUA_Achr10P...	Banana	extracellular	51.16	53.66
GSMUA_Achr6P11540_001	Banana	extracellular	48.84	51.22
Solyc06g075190.1.1	Tomato	extracellular	54.65	49.47
PGSC0003DMT400008688	Potato	extracellular	53.49	48.42
CDX91043	Canola	extracellular	50.0	46.74
KRG98169	Soybean	endoplasmic reticulum, extracellular	45.35	43.82
KRH30128	Soybean	extracellular	44.19	42.7
KRH72810	Soybean	extracellular	38.37	33.33
CDY02643	Canola	cytosol, golgi, nucleus	46.51	32.79
KRH17161	Soybean	extracellular	36.05	31.96

Protein Annotations

EMBL:ACUP02000753	EMBL:BT096342	EnsemblPlants:KRH70160	EnsemblPlantsGene:GLYMA_02G072300	EntrezGene:100803573	PANTHER:PTHR34132
PANTHER:PTHR34132:SF5	ProteinID:KRH70160	ProteinID:KRH70160.1	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI0001B16625	UniProt:C6TFF4	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:6340141..6341458

Molecular Weight (calculated)

9930.8 Da

IEP (calculated)

9.165

GRAVY (calculated)

-0.327

Length

86 amino acids

Sequence
(BLAST)

1: MCPLRFILVF FSAVLAGYFA WKTVRSNPIE VFSEDSADED KSSKKGDFDF KKMIQNGFWG FVDMASGRYL WRNLRSTNKD AELKSS

Best Arabidopsis Sequence Match ( AT5G14602.1 )
(BLAST)

1: MCPLRFVLVF FSAVLAGYIA WRTVNSTPEL FSDELLQAEA KEKQGLDFKR KMDNGLWTFV DMASGRYLWR NLKEMRQRSQ

Arabidopsis Description

FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Methyltransferase-related protein (TAIR:AT5G18150.1); Has 30201 Blast hits to 17322 prote /.../ 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G14602]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.