CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

plastid 1
golgi 1
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, golgi, plastid
BaCelLo:	plastid
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX80028
CDX84933
CDX89063
CDY03907
CDY15722
CDY27317
CDY27605
CDY41153
CDY48365
CDY56879
CDY61731

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18150.1	CDX84933	AT1G27300.1	21798944
AT5G18150.1	CDY03907	AT1G27300.1	21798944
AT5G18150.1	CDY15722	AT1G27300.1	21798944
AT5G18150.1	CDY27605	AT1G27300.1	21798944
AT5G18150.1	CDX80028	AT2G46550.1	21798944
AT5G18150.1	CDY27317	AT2G46550.1	21798944
AT5G18150.1	CDY56879	AT2G46550.1	21798944
AT5G18150.1	CDY61731	AT2G46550.1	21798944
AT5G18150.1	CDX67837	AT3G60600.1	21798944
AT5G18150.1	CDX71796	AT3G60600.1	21798944
AT5G18150.1	CDX89063	AT3G60600.1	21798944
AT5G18150.1	CDY41153	AT3G60600.1	21798944
AT5G18150.1	CDY48365	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53255	Canola	extracellular	51.64	79.75
CDY25454	Canola	extracellular	50.82	75.61
CDY38491	Canola	extracellular	47.54	74.36
AT5G18150.1	Thale cress	extracellular	45.9	73.68
CDX78780	Canola	extracellular	48.36	71.08
CDX70798	Canola	extracellular	47.54	69.88
CDX85592	Canola	extracellular	38.52	63.51
CDX91042	Canola	extracellular	39.34	62.34
CDX91043	Canola	extracellular	36.89	48.91
VIT_11s0149g00310.t01	Wine grape	extracellular	35.25	48.86
VIT_08s0007g07390.t01	Wine grape	extracellular	34.43	47.19
KRH70160	Soybean	extracellular	32.79	46.51
GSMUA_Achr10P...	Banana	extracellular	31.15	46.34
KRG94827	Soybean	endoplasmic reticulum, extracellular	29.51	44.44
GSMUA_Achr6P11540_001	Banana	extracellular	29.51	43.9
KRH08496	Soybean	extracellular	31.15	43.68
PGSC0003DMT400008688	Potato	extracellular	31.97	41.05
Solyc06g075190.1.1	Tomato	extracellular	31.97	41.05
KRH06709	Soybean	endoplasmic reticulum, extracellular	27.87	39.08
CDX88672	Canola	extracellular	22.95	32.94
CDY43858	Canola	extracellular	22.13	31.03
CDY70047	Canola	extracellular	22.13	31.03
CDY71001	Canola	extracellular	22.13	30.68

Protein Annotations

EnsemblPlants:CDY02643	EnsemblPlantsGene:GSBRNA2T00114775001	GO:A0A078ESU2	PANTHER:PTHR34132	PANTHER:PTHR34132:SF1	ProteinID:CDY02643
ProteinID:CDY02643.1	TMHMM:TMhelix	UniParc:UPI0004EEC984	MapMan:35.2	:	:

Description

BnaC02g07920D

Coordinates

chrLK031936:+:602453..603510

Molecular Weight (calculated)

14470.3 Da

IEP (calculated)

9.776

GRAVY (calculated)

-0.583

Length

122 amino acids

Sequence
(BLAST)

001: MKNADHWIKL FFSYKKNDDV IKRQNQGEFG KNLKIYEIPV PISPTYYSLV FFSAVLAGYF AWKTVSSSPE LISDDSPVEL NDKQGLSFNK KMENGFWVFI
101: DMASGRYHWR NLKEMREKTQ WR

Best Arabidopsis Sequence Match ( AT5G18150.1 )
(BLAST)

1: MCPMRFLLVF FSAVLAGYFA WKTVSSSPEF DSPDELNEKQ ELNLKKKMEN GFWVFVDMAS GRYLWRNLKE MREKSQ

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FK55]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.