Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g098600.2.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 92.81 | 92.81 |
| KRG96872 | Soybean | mitochondrion, plastid | 55.4 | 43.26 |
| KRH68600 | Soybean | mitochondrion, plastid | 53.24 | 41.81 |
| PGSC0003DMT400008268 | Potato | extracellular, golgi | 41.01 | 33.73 |
| PGSC0003DMT400002793 | Potato | extracellular, mitochondrion, plasma membrane, plastid | 41.01 | 28.93 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400073558 | EnsemblPlantsGene:PGSC0003DMG400028573 | EntrezGene:102589733 | InterPro:DUF1068 | ncoils:Coil | PANTHER:PTHR32254 |
| PANTHER:PTHR32254:SF6 | PFAM:PF06364 | PGSC:PGSC0003DMG400028573 | RefSeq:XP_006361881.1 | SEG:seg | UniParc:UPI000295BCD9 |
| UniProt:M1CS87 | MapMan:35.2 | : | : | : | : |
Description
Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028573]
Coordinates
chr1:+:76280413..76283974
Molecular Weight (calculated)
15533.4 Da
IEP (calculated)
4.635
GRAVY (calculated)
-0.540
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTPPTLRHS KALSSCPPCF CDCEEDPMFS PIDILNSSLA DCGKNDPQLN EEMKKDIATL LAEEINLQKN VTDDVLNRTK ALIMSAKRAS SHYQKESEKC
101: NIGIDTCEGG REKAEAALIE ERKLSALWET RAIEFGWKD
101: NIGIDTCEGG REKAEAALIE ERKLSALWET RAIEFGWKD
001: MAKHTAALKV GLALLALSMI GYILGPPLYW HLTEALAVSA TSCSACVCDC SSLPLLTIPT GLSNGSFTDC AKRDPEVNED TEKNYAELLT EELKQREAAS
101: MEKHKRVDTG LLEAKKITSS YQKEADKCNS GMETCEEARE KAEKALVEQK KLTSMWEQRA RQKGYKDGAT KSTVKSKSGT EVA
101: MEKHKRVDTG LLEAKKITSS YQKEADKCNS GMETCEEARE KAEKALVEQK KLTSMWEQRA RQKGYKDGAT KSTVKSKSGT EVA
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80895]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.