Factsheet for Solyc03g116990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
endoplasmic reticulum 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051074	Potato	mitochondrion, plastid	71.56	100.0
Solyc06g010060.1.1	Tomato	nucleus	97.25	94.64
AT5G60460.1	Thale cress	plastid	66.97	66.97
VIT_13s0019g04080.t01	Wine grape	plastid	66.06	66.67
KRH26396	Soybean	endoplasmic reticulum	63.3	65.71
Bra006659.1-P	Field mustard	plastid	65.14	65.14
CDX88759	Canola	plastid	65.14	65.14
CDY67667	Canola	plastid	64.22	64.22
KRH38145	Soybean	golgi, plastid, vacuole	40.37	62.86
Bra002478.1-P	Field mustard	plastid	62.39	62.39
CDX80167	Canola	plastid	62.39	62.39
CDY31544	Canola	plastid	62.39	62.39
KRH01231	Soybean	mitochondrion	45.87	60.24
KRH01163	Soybean	plastid	44.95	59.04

Protein Annotations

MapMan:23.3.1.3.2	GO:GO:0003674	GO:GO:0005086	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005784
GO:GO:0006616	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0015450
GO:GO:0016020	GO:GO:0016021	GO:GO:0031204	GO:GO:0031205	GO:GO:0065009	UniProt:K4BLK1
PFAM:PF03911	PIRSF:PIRSF006398	PANTHER:PTHR13509	PANTHER:PTHR13509:SF8	InterPro:Sec61-beta/Sbh	InterPro:SecG/Sec61-beta/Sbh
EnsemblPlantsGene:Solyc03g116990.1	EnsemblPlants:Solyc03g116990.1.1	TMHMM:TMhelix	UniParc:UPI00027674CE	SEG:seg	:

Description

Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:K4BLK1]

Coordinates

chr3:-:66257223..66257552

Molecular Weight (calculated)

10926.0 Da

IEP (calculated)

12.155

GRAVY (calculated)

-0.074

Length

109 amino acids

Sequence
(BLAST)

001: MARGSSSQST SSSTTRPGTA APRGSAAATA GMRRRRLGAS SSAGGGGGNA VVGSGNASNM LRFYTDDSPG LKISPTVVLV MSLCFIGFVT TLHVLGKFYR
101: YRSGSGSGA

Best Arabidopsis Sequence Match ( AT5G60460.1 )
(BLAST)

001: MARGSSQSQQ STSTGSSTAR PGLAAPRGSA AATAGMRRRR LGGGGGVSSG GGSGVGSGSS NMLRFYTDDA PGLKISPTVV LIMSLCFIGF VTALHVFGKL
101: YLHKSGSQA

Arabidopsis Description

Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9FKK1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.