Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 7
- endoplasmic reticulum 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 nucleus: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH38145 | Soybean | golgi, plastid, vacuole | 56.19 | 84.29 |
| KRH01231 | Soybean | mitochondrion | 58.1 | 73.49 |
| KRH01163 | Soybean | plastid | 58.1 | 73.49 |
| AT5G60460.1 | Thale cress | plastid | 75.24 | 72.48 |
| VIT_13s0019g04080.t01 | Wine grape | plastid | 74.29 | 72.22 |
| CDX88759 | Canola | plastid | 74.29 | 71.56 |
| Bra006659.1-P | Field mustard | plastid | 74.29 | 71.56 |
| CDY31544 | Canola | plastid | 72.38 | 69.72 |
| CDY67667 | Canola | plastid | 72.38 | 69.72 |
| CDX80167 | Canola | plastid | 72.38 | 69.72 |
| Bra002478.1-P | Field mustard | plastid | 72.38 | 69.72 |
| PGSC0003DMT400051074 | Potato | mitochondrion, plastid | 48.57 | 65.38 |
| PGSC0003DMT400090964 | Potato | plastid | 65.71 | 64.49 |
| Solyc03g116990.1.1 | Tomato | plastid | 65.71 | 63.3 |
| Solyc06g010060.1.1 | Tomato | nucleus | 66.67 | 62.5 |
| KRH65413 | Soybean | endoplasmic reticulum | 47.62 | 60.98 |
| KRH76131 | Soybean | plastid | 47.62 | 60.98 |
Protein Annotations
| EntrezGene:100814692 | MapMan:23.3.1.3.2 | EMBL:ACUP02007711 | EnsemblPlantsGene:GLYMA_12G171400 | GO:GO:0003674 | GO:GO:0005086 |
| GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005784 | GO:GO:0006616 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0015031 | GO:GO:0015450 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031204 |
| GO:GO:0031205 | GO:GO:0065009 | UniProt:I1LTG9 | EnsemblPlants:KRH26396 | ProteinID:KRH26396 | ProteinID:KRH26396.1 |
| PFAM:PF03911 | PIRSF:PIRSF006398 | PANTHER:PTHR13509 | PANTHER:PTHR13509:SF8 | InterPro:Sec61-beta/Sbh | InterPro:SecG/Sec61-beta/Sbh |
| TMHMM:TMhelix | UniParc:UPI000233D302 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr12:+:32739741..32740626
Molecular Weight (calculated)
10557.7 Da
IEP (calculated)
12.226
GRAVY (calculated)
-0.023
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGSSQSQS STSTATRPGP AGMAPRGSAA ATAGMRRRRL GGGNSSASTG VGGGSSNMLR FYTDDAPGLK ISPTVVLVMS LCFIGFVTAL HVFGKLYRSK
101: SGGAV
101: SGGAV
001: MARGSSQSQQ STSTGSSTAR PGLAAPRGSA AATAGMRRRR LGGGGGVSSG GGSGVGSGSS NMLRFYTDDA PGLKISPTVV LIMSLCFIGF VTALHVFGKL
101: YLHKSGSQA
101: YLHKSGSQA
Arabidopsis Description
Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9FKK1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.