CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 5
endoplasmic reticulum 2
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76131	Soybean	plastid	100.0	100.0
CDY27395	Canola	mitochondrion, plastid	80.49	82.5
PGSC0003DMT400018011	Potato	mitochondrion	82.93	80.95
Bra000368.1-P	Field mustard	plastid	80.49	80.49
CDX83408	Canola	plastid	80.49	80.49
AT3G60540.2	Thale cress	plastid	76.83	77.78
AT2G45070.3	Thale cress	plastid	76.83	76.83
Bra004887.1-P	Field mustard	plastid	75.61	74.7
CDX74708	Canola	plastid	75.61	74.7
CDY18954	Canola	plastid	74.39	72.62
Bra040326.1-P	Field mustard	plastid	71.95	71.08
CDY37026	Canola	plastid	71.95	71.08
VIT_05s0094g00210.t01	Wine grape	mitochondrion	57.32	70.15
TraesCS5A01G015200.1	Wheat	plastid	65.85	68.35
TraesCS5B01G013400.1	Wheat	plastid	65.85	68.35
Zm00001d044231_P001	Maize	plastid	65.85	66.67
TraesCS5D01G021100.1	Wheat	plastid	63.41	66.67
Os01t0565900-01	Rice	plastid	64.63	66.25
Zm00001d011185_P001	Maize	plastid	64.63	65.43
GSMUA_Achr9P04740_001	Banana	plastid	64.63	65.43
EES00928	Sorghum	plastid	64.63	65.43
TraesCS3A01G207800.1	Wheat	plastid	65.85	65.06
TraesCS3D01G208200.1	Wheat	plastid	65.85	65.06
TraesCS3B01G234900.1	Wheat	plastid	65.85	64.29
HORVU3Hr1G048610.1	Barley	endoplasmic reticulum	64.63	63.86
Zm00001d044237_P001	Maize	plastid	62.2	62.96
Os12t0173366-01	Rice	plastid	62.2	61.45
VIT_15s0021g02620.t01	Wine grape	plastid	82.93	60.71
KRH38145	Soybean	golgi, plastid, vacuole	42.68	50.0
KRH01163	Soybean	plastid	50.0	49.4
KRH01231	Soybean	mitochondrion	48.78	48.19
KRH26396	Soybean	endoplasmic reticulum	60.98	47.62
VIT_15s0021g02490.t01	Wine grape	cytosol	85.37	44.59
GSMUA_Achr7P24220_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	64.63	37.86
VIT_05s0094g00170.t01	Wine grape	cytosol	76.83	36.0

Protein Annotations

EntrezGene:100500335	EntrezGene:100790740	MapMan:23.3.1.3.2	EMBL:ACUP02000569	EMBL:ACUP02001344	EMBL:BT091254
UniProt:C6T1E8	EnsemblPlantsGene:GLYMA_03G034100	GO:GO:0003674	GO:GO:0005086	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005784	GO:GO:0006616	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031
GO:GO:0015450	GO:GO:0016020	GO:GO:0016021	GO:GO:0031204	GO:GO:0031205	GO:GO:0065009
EnsemblPlants:KRH65413	ProteinID:KRH65413	ProteinID:KRH65413.1	ProteinID:KRH76131.1	PFAM:PF03911	PIRSF:PIRSF006398
PANTHER:PTHR13509	PANTHER:PTHR13509:SF2	InterPro:Sec61-beta/Sbh	InterPro:SecG/Sec61-beta/Sbh	TMHMM:TMhelix	UniParc:UPI0001B15893
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:3985015..3987044

Molecular Weight (calculated)

8457.5 Da

IEP (calculated)

11.821

GRAVY (calculated)

0.370

Length

82 amino acids

Sequence
(BLAST)

1: MALGGTAPPR GSAAATASMR RRRTTGGAAS GGAAGTMLQF YTDDAPGLKI SPNVVLVMSI GFIAFVAILH VMGKLYFVRR EA

Best Arabidopsis Sequence Match ( AT3G60540.2 )
(BLAST)

1: MVGGGAPQRG SAAATASMRR RKPAGGSSSA GGGAGTMLQF YTDDAPGLKI SPNVVLIMSI GFIAFVAVLH VMGKLYFVKS K

Arabidopsis Description

Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9M206]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.