CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044231_P001	Maize	plastid	98.77	98.77
Zm00001d044237_P001	Maize	plastid	92.59	92.59
TraesCS5D01G021100.1	Wheat	plastid	88.89	92.31
TraesCS3D01G208200.1	Wheat	plastid	93.83	91.57
TraesCS3A01G207800.1	Wheat	plastid	93.83	91.57
Zm00001d011185_P001	Maize	plastid	91.36	91.36
Os01t0565900-01	Rice	plastid	90.12	91.25
HORVU3Hr1G048610.1	Barley	endoplasmic reticulum	92.59	90.36
TraesCS3B01G234900.1	Wheat	plastid	91.36	88.1
TraesCS5B01G013400.1	Wheat	plastid	83.95	86.08
TraesCS5A01G015200.1	Wheat	plastid	83.95	86.08
Os12t0173366-01	Rice	plastid	81.48	79.52
CDY27395	Canola	mitochondrion, plastid	64.2	65.0
AT2G45070.3	Thale cress	plastid	65.43	64.63
KRH65413	Soybean	endoplasmic reticulum	65.43	64.63
KRH76131	Soybean	plastid	65.43	64.63
Bra000368.1-P	Field mustard	plastid	64.2	63.41
CDX83408	Canola	plastid	64.2	63.41
Bra004887.1-P	Field mustard	plastid	62.96	61.45
CDX74708	Canola	plastid	62.96	61.45
AT3G60540.2	Thale cress	plastid	59.26	59.26
VIT_05s0094g00210.t01	Wine grape	mitochondrion	48.15	58.21
CDY37026	Canola	plastid	59.26	57.83
Bra040326.1-P	Field mustard	plastid	59.26	57.83
CDY18954	Canola	plastid	59.26	57.14
PGSC0003DMT400018011	Potato	mitochondrion	58.02	55.95
OQU77247	Sorghum	plastid	46.91	53.52
VIT_15s0021g02620.t01	Wine grape	plastid	66.67	48.21
GSMUA_Achr7P24220_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	77.78	45.0
VIT_15s0021g02490.t01	Wine grape	cytosol	69.14	35.67
VIT_05s0094g00170.t01	Wine grape	cytosol	60.49	28.0

Protein Annotations

MapMan:23.3.1.3.2	EntrezGene:8078189	UniProt:C5XNN9	EnsemblPlants:EES00928	ProteinID:EES00928	ProteinID:EES00928.1
GO:GO:0003674	GO:GO:0005086	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005784	GO:GO:0006616
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0015450	GO:GO:0016020
GO:GO:0016021	GO:GO:0031204	GO:GO:0031205	GO:GO:0065009	PFAM:PF03911	PIRSF:PIRSF006398
PANTHER:PTHR13509	PANTHER:PTHR13509:SF2	EnsemblPlantsGene:SORBI_3003G191500	unigene:Sbi.13041	InterPro:Sec61-beta/Sbh	InterPro:SecG/Sec61-beta/Sbh
TMHMM:TMhelix	UniParc:UPI000182BDE6	RefSeq:XP_002455808.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:51260643..51262637

Molecular Weight (calculated)

8250.0 Da

IEP (calculated)

11.821

GRAVY (calculated)

0.140

Length

81 amino acids

Sequence
(BLAST)

1: MVANGDAPAR GSAAAAASLR RRRTTSGAAG GGGGASSMLQ FYTDEAAGRK MSPNTVLIMS IGFIAVVAML HVFGKLYRTS N

Best Arabidopsis Sequence Match ( AT3G60540.2 )
(BLAST)

1: MVGGGAPQRG SAAATASMRR RKPAGGSSSA GGGAGTMLQF YTDDAPGLKI SPNVVLIMSI GFIAFVAVLH VMGKLYFVKS K

Arabidopsis Description

Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9M206]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.