CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 3
golgi 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, plasma membrane	49.3	74.47
HORVU5Hr1G048380.2	Barley	endoplasmic reticulum, golgi, plastid	70.42	70.42
Zm00001d011050_P001	Maize	plastid	97.18	64.49
Os12t0103300-01	Rice	plastid	84.51	58.82
Os11t0104050-01	Rice	plasma membrane	87.32	57.94
TraesCS4A01G183100.1	Wheat	plastid	80.28	51.35
TraesCS4B01G135500.1	Wheat	plastid	80.28	51.35
TraesCS4D01G130200.1	Wheat	golgi	80.28	51.35
TraesCS5A01G155200.1	Wheat	plastid	80.28	51.35
TraesCS5B01G153400.1	Wheat	plastid	80.28	50.89
HORVU4Hr1G025090.1	Barley	plastid	78.87	50.45
TraesCS5D01G160200.1	Wheat	plastid	78.87	50.0
EES00928	Sorghum	plastid	53.52	46.91

Protein Annotations

MapMan:23.3.1.3.2	UniProt:A0A1Z5R0D6	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005784	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	EnsemblPlants:OQU77247	ProteinID:OQU77247	ProteinID:OQU77247.1	PFAM:PF03911
PIRSF:PIRSF006398	PANTHER:PTHR13509	PANTHER:PTHR13509:SF8	EnsemblPlantsGene:SORBI_3009G016201	InterPro:Sec61-beta/Sbh	InterPro:SecG/Sec61-beta/Sbh
TMHMM:TMhelix	UniParc:UPI000B8B97BA	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:1523034..1524775

Molecular Weight (calculated)

7490.2 Da

IEP (calculated)

12.045

GRAVY (calculated)

0.183

Length

71 amino acids

Sequence
(BLAST)

1: MRRRRATSSA GGGGFSGGGG SNMLRFYTDE APGLRLSPTM VLVMSLCFIG FVTALHIFGK LYRSRTAAAS A

Best Arabidopsis Sequence Match ( AT5G60460.1 )
(BLAST)

001: MARGSSQSQQ STSTGSSTAR PGLAAPRGSA AATAGMRRRR LGGGGGVSSG GGSGVGSGSS NMLRFYTDDA PGLKISPTVV LIMSLCFIGF VTALHVFGKL
101: YLHKSGSQA

Arabidopsis Description

Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9FKK1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.