Factsheet for Zm00001d011050_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, vacuole
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	vacuole
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

extracellular: 20408568
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77247	Sorghum	plastid	64.49	97.18
Os11t0104050-01	Rice	plasma membrane	87.85	87.85
Zm00001d035610_P001	Maize	plastid	85.98	85.19
TraesCS4A01G183100.1	Wheat	plastid	79.44	76.58
TraesCS4B01G135500.1	Wheat	plastid	79.44	76.58
TraesCS4D01G130200.1	Wheat	golgi	79.44	76.58
HORVU4Hr1G025090.1	Barley	plastid	78.5	75.68
TraesCS5A01G155200.1	Wheat	plastid	78.5	75.68
TraesCS5B01G153400.1	Wheat	plastid	78.5	75.0
HORVU5Hr1G048380.2	Barley	endoplasmic reticulum, golgi, plastid	49.53	74.65
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, plasma membrane	32.71	74.47
TraesCS5D01G160200.1	Wheat	plastid	77.57	74.11
Os12t0103300-01	Rice	plastid	58.88	61.76
Zm00001d044231_P001	Maize	plastid	38.32	50.62
Zm00001d011185_P001	Maize	plastid	36.45	48.15
Zm00001d044237_P001	Maize	plastid	36.45	48.15

Protein Annotations

EntrezGene:100280873	MapMan:23.3.1.3.2	ProteinID:AQK95494.1	UniProt:B6SNM4	EMBL:EU954339	EMBL:EU963617
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005784
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021
PFAM:PF03911	PIRSF:PIRSF006398	PANTHER:PTHR13509	PANTHER:PTHR13509:SF8	InterPro:Sec61-beta/Sbh	InterPro:SecG/Sec61-beta/Sbh
TMHMM:TMhelix	UniParc:UPI000182B642	EnsemblPlantsGene:Zm00001d011050	EnsemblPlants:Zm00001d011050_P001	EnsemblPlants:Zm00001d011050_T001	SEG:seg

Description

Protein transport protein Sec61 beta subunit

Coordinates

chr8:+:137412009..137412332

Molecular Weight (calculated)

10614.8 Da

IEP (calculated)

12.426

GRAVY (calculated)

0.101

Length

107 amino acids

Sequence
(BLAST)

001: MARSSSQSQS SVGAGAGAGA RPATVGPRGT AAAAAGMRRR RATASGGGGG FSGGGGSNML RFYTDEAPGL RLSPTMVLVM SLCFIGFVTA LHIFGKLYRS
101: RTAAASA

Best Arabidopsis Sequence Match ( AT5G60460.1 )
(BLAST)

001: MARGSSQSQQ STSTGSSTAR PGLAAPRGSA AATAGMRRRR LGGGGGVSSG GGSGVGSGSS NMLRFYTDDA PGLKISPTVV LIMSLCFIGF VTALHVFGKL
101: YLHKSGSQA

Arabidopsis Description

Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9FKK1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.