Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d011050_P001 | Maize | plastid | 85.19 | 85.98 |
| Os11t0104050-01 | Rice | plasma membrane | 76.85 | 77.57 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, plasma membrane | 32.41 | 74.47 |
| HORVU5Hr1G048380.2 | Barley | endoplasmic reticulum, golgi, plastid | 48.15 | 73.24 |
| TraesCS4A01G183100.1 | Wheat | plastid | 71.3 | 69.37 |
| TraesCS4B01G135500.1 | Wheat | plastid | 71.3 | 69.37 |
| TraesCS4D01G130200.1 | Wheat | golgi | 71.3 | 69.37 |
| HORVU4Hr1G025090.1 | Barley | plastid | 70.37 | 68.47 |
| TraesCS5A01G155200.1 | Wheat | plastid | 70.37 | 68.47 |
| TraesCS5B01G153400.1 | Wheat | plastid | 70.37 | 67.86 |
| TraesCS5D01G160200.1 | Wheat | plastid | 69.44 | 66.96 |
| Os12t0103300-01 | Rice | plastid | 56.48 | 59.8 |
| Zm00001d044231_P001 | Maize | plastid | 39.81 | 53.09 |
| Zm00001d011185_P001 | Maize | plastid | 37.96 | 50.62 |
| Zm00001d044237_P001 | Maize | plastid | 37.96 | 50.62 |
Protein Annotations
| MapMan:23.3.1.3.2 | UniProt:A0A1D6LHK0 | ProteinID:AQK79349.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005784 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | PFAM:PF03911 | PIRSF:PIRSF006398 | PANTHER:PTHR13509 |
| PANTHER:PTHR13509:SF8 | InterPro:Sec61-beta/Sbh | InterPro:SecG/Sec61-beta/Sbh | TMHMM:TMhelix | UniParc:UPI000844BC4D | EnsemblPlantsGene:Zm00001d035610 |
| EnsemblPlants:Zm00001d035610_P001 | EnsemblPlants:Zm00001d035610_T001 | SEG:seg | : | : | : |
Description
Preprotein translocase Sec Sec61-beta subunit protein
Coordinates
chr6:+:36648271..36648597
Molecular Weight (calculated)
10673.8 Da
IEP (calculated)
12.426
GRAVY (calculated)
0.052
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MARSSSQSQS SVGGGGGGGG ARPATVGPRG TAAAAAGMRR RRATSSAGGG GFSGAGGSNM LRFYTDEAPG LRLSPTMVLV MSLCFIGFVT ALHIFGKLYR
101: SRTAAASA
101: SRTAAASA
001: MARGSSQSQQ STSTGSSTAR PGLAAPRGSA AATAGMRRRR LGGGGGVSSG GGSGVGSGSS NMLRFYTDDA PGLKISPTVV LIMSLCFIGF VTALHVFGKL
101: YLHKSGSQA
101: YLHKSGSQA
Arabidopsis Description
Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9FKK1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.