Factsheet for TraesCS4D01G130200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 5
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	endoplasmic reticulum, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G183100.1	Wheat	plastid	100.0	100.0
TraesCS4B01G135500.1	Wheat	plastid	100.0	100.0
HORVU4Hr1G025090.1	Barley	plastid	99.1	99.1
Os11t0104050-01	Rice	plasma membrane	81.08	84.11
TraesCS5D01G160200.1	Wheat	plastid	84.68	83.93
OQU77247	Sorghum	plastid	51.35	80.28
Zm00001d011050_P001	Maize	plastid	76.58	79.44
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, plasma membrane	32.43	76.6
Zm00001d035610_P001	Maize	plastid	69.37	71.3
Os12t0103300-01	Rice	plastid	58.56	63.73
TraesCS5D01G021100.1	Wheat	plastid	36.04	51.28
TraesCS3D01G208200.1	Wheat	plastid	36.94	49.4

Protein Annotations

EnsemblPlants:TraesCS4D01G130200.1	EnsemblPlantsGene:TraesCS4D01G130200	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005784	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020
InterPro:Sec61-beta/Sbh	InterPro:SecG/Sec61-beta/Sbh	PANTHER:PTHR13509	PANTHER:PTHR13509:SF8	PFAM:PF03911	PIRSF:PIRSF006398
SEG:seg	TMHMM:TMhelix	MapMan:23.3.1.3.2	:	:	:

Description

No Description!

Coordinates

chr4D:-:116153074..116153810

Molecular Weight (calculated)

11032.1 Da

IEP (calculated)

12.426

GRAVY (calculated)

-0.084

Length

111 amino acids

Sequence
(BLAST)

001: MARSSSQSQS SVGGAGAAGS RPATAGPRGT PAATAGMRRR PGRTSSSASG GGGFSGGGGN NMLRFYTDEA PGLRLSPTMV LVMSVCFIGF VTALHVFGKL
101: YRSRTAASAS A

Best Arabidopsis Sequence Match ( AT5G60460.1 )
(BLAST)

001: MARGSSQSQQ STSTGSSTAR PGLAAPRGSA AATAGMRRRR LGGGGGVSSG GGSGVGSGSS NMLRFYTDDA PGLKISPTVV LIMSLCFIGF VTALHVFGKL
101: YLHKSGSQA

Arabidopsis Description

Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9FKK1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.