Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 6
- vacuole 3
- plasma membrane 4
- golgi 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G048380.2 | Barley | endoplasmic reticulum, golgi, plastid | 76.6 | 50.7 |
| OQU77247 | Sorghum | plastid | 74.47 | 49.3 |
| GSMUA_Achr5P08440_001 | Banana | mitochondrion | 93.62 | 41.51 |
| GSMUA_Achr10P... | Banana | mitochondrion | 89.36 | 39.25 |
| GSMUA_Achr7P22710_001 | Banana | plastid | 87.23 | 37.96 |
| Os12t0103300-01 | Rice | plastid | 78.72 | 36.27 |
| Os11t0104050-01 | Rice | plasma membrane | 78.72 | 34.58 |
| Zm00001d011050_P001 | Maize | plastid | 74.47 | 32.71 |
| HORVU4Hr1G025090.1 | Barley | plastid | 76.6 | 32.43 |
| TraesCS4A01G183100.1 | Wheat | plastid | 76.6 | 32.43 |
| TraesCS4B01G135500.1 | Wheat | plastid | 76.6 | 32.43 |
| TraesCS4D01G130200.1 | Wheat | golgi | 76.6 | 32.43 |
| TraesCS5A01G155200.1 | Wheat | plastid | 76.6 | 32.43 |
| Zm00001d035610_P001 | Maize | plastid | 74.47 | 32.41 |
| TraesCS5B01G153400.1 | Wheat | plastid | 76.6 | 32.14 |
| TraesCS5D01G160200.1 | Wheat | plastid | 76.6 | 32.14 |
| GSMUA_Achr9P04740_001 | Banana | plastid | 51.06 | 29.63 |
| GSMUA_Achr7P24220_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 55.32 | 18.57 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP15680_001 | EnsemblPlants:GSMUA_AchrUn_randomT15680_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG15680_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005784 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:Sec61-beta/Sbh | InterPro:SecG/Sec61-beta/Sbh | PANTHER:PTHR13509 | PANTHER:PTHR13509:SF8 |
| PFAM:PF03911 | TMHMM:TMhelix | UniParc:UPI000295F5DD | UniProt:M0U9H7 | MapMan:23.3.1.3.2 | : |
Description
Protein transport protein Sec61 subunit beta [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG15680_001]
Coordinates
chrchrUn_random:-:74483355..74483498
Molecular Weight (calculated)
5195.5 Da
IEP (calculated)
9.946
GRAVY (calculated)
0.566
Length
47 amino acids
Sequence
(BLAST)
(BLAST)
1: MLRFYTDDAP GIKMTPTVVL VMSLCFIGFV TALHVFGKLY RNRAGGS
001: MARGSSQSQQ STSTGSSTAR PGLAAPRGSA AATAGMRRRR LGGGGGVSSG GGSGVGSGSS NMLRFYTDDA PGLKISPTVV LIMSLCFIGF VTALHVFGKL
101: YLHKSGSQA
101: YLHKSGSQA
Arabidopsis Description
Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9FKK1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.