Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G183100.1 | Wheat | plastid | 99.1 | 99.1 |
| TraesCS4B01G135500.1 | Wheat | plastid | 99.1 | 99.1 |
| TraesCS4D01G130200.1 | Wheat | golgi | 99.1 | 99.1 |
| Os11t0104050-01 | Rice | plasma membrane | 80.18 | 83.18 |
| OQU77247 | Sorghum | plastid | 50.45 | 78.87 |
| Zm00001d011050_P001 | Maize | plastid | 75.68 | 78.5 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, plasma membrane | 32.43 | 76.6 |
| HORVU5Hr1G048380.2 | Barley | endoplasmic reticulum, golgi, plastid | 47.75 | 74.65 |
| Zm00001d035610_P001 | Maize | plastid | 68.47 | 70.37 |
| Os12t0103300-01 | Rice | plastid | 57.66 | 62.75 |
| HORVU3Hr1G048610.1 | Barley | endoplasmic reticulum | 36.04 | 48.19 |
Protein Annotations
| MapMan:23.3.1.3.2 | EMBL:AK353887 | EMBL:AK365507 | EMBL:AK366645 | UniProt:F2CQI5 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005784 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:HORVU4Hr1G025090 |
| EnsemblPlants:HORVU4Hr1G025090.1 | PFAM:PF03911 | PIRSF:PIRSF006398 | PANTHER:PTHR13509 | PANTHER:PTHR13509:SF8 | InterPro:Sec61-beta/Sbh |
| InterPro:SecG/Sec61-beta/Sbh | TMHMM:TMhelix | UniParc:UPI000200467E | SEG:seg | : | : |
Description
Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:F2CQI5]
Coordinates
chrchr4H:+:145303339..145305052
Molecular Weight (calculated)
11062.1 Da
IEP (calculated)
12.426
GRAVY (calculated)
-0.087
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MARSSSQSQS SVGGAGAAGS RPATAGPRGT PAATAGMRRR PGRTSSSASG GGGFSSGGGN NMLRFYTDEA PGLRLSPTMV LVMSVCFIGF VTALHVFGKL
101: YRSRTAASAS A
101: YRSRTAASAS A
001: MARGSSQSQQ STSTGSSTAR PGLAAPRGSA AATAGMRRRR LGGGGGVSSG GGSGVGSGSS NMLRFYTDDA PGLKISPTVV LIMSLCFIGF VTALHVFGKL
101: YLHKSGSQA
101: YLHKSGSQA
Arabidopsis Description
Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9FKK1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.