Factsheet for Os11t0104050-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 5
endoplasmic reticulum 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 19502382
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011050_P001	Maize	plastid	87.85	87.85
OQU77247	Sorghum	plastid	57.94	87.32
TraesCS4A01G183100.1	Wheat	plastid	84.11	81.08
TraesCS4B01G135500.1	Wheat	plastid	84.11	81.08
TraesCS4D01G130200.1	Wheat	golgi	84.11	81.08
HORVU4Hr1G025090.1	Barley	plastid	83.18	80.18
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, plasma membrane	34.58	78.72
TraesCS5A01G155200.1	Wheat	plastid	80.37	77.48
Zm00001d035610_P001	Maize	plastid	77.57	76.85
TraesCS5B01G153400.1	Wheat	plastid	80.37	76.79
TraesCS5D01G160200.1	Wheat	plastid	80.37	76.79
HORVU5Hr1G048380.2	Barley	endoplasmic reticulum, golgi, plastid	48.6	73.24
Os12t0103300-01	Rice	plastid	65.42	68.63
Os01t0565900-01	Rice	plastid	38.32	51.25
Os12t0173366-01	Rice	plastid	36.45	46.99

Protein Annotations

MapMan:23.3.1.3.2	EntrezGene:9271333	ProteinID:ABA91053.1	EMBL:AK243463	ProteinID:BAH95026.1	ProteinID:BAT12289.1
GO:GO:0003674	GO:GO:0005086	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005784	GO:GO:0006616
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0015450	GO:GO:0016020
GO:GO:0016021	GO:GO:0031204	GO:GO:0031205	EnsemblPlantsGene:Os11g0104050	EnsemblPlants:Os11t0104050-01	PFAM:PF03911
PIRSF:PIRSF006398	PANTHER:PTHR13509	PANTHER:PTHR13509:SF8	UniProt:Q2RBP5	InterPro:Sec61-beta/Sbh	InterPro:SecG/Sec61-beta/Sbh
TMHMM:TMhelix	UniParc:UPI000068262A	RefSeq:XP_015615361.1	SEG:seg	:	:

Description

Preprotein translocase Sec, Sec61-beta subunit, eukarya domain containing protein. (Os11t0104050-01)

Coordinates

chr11:-:162815..163466

Molecular Weight (calculated)

10690.8 Da

IEP (calculated)

12.426

GRAVY (calculated)

0.087

Length

107 amino acids

Sequence
(BLAST)

001: MARSSSQSQS SVGASAGAAR PATVGPRGTA AAAAGMRRRR ASTAGGSGGF SGGGGSNMLR FYTDEAPGLR LSPTMVLVMS LCFIGFVTAL HVFGKLYRSR
101: TAASASA

Best Arabidopsis Sequence Match ( AT5G60460.1 )
(BLAST)

001: MARGSSQSQQ STSTGSSTAR PGLAAPRGSA AATAGMRRRR LGGGGGVSSG GGSGVGSGSS NMLRFYTDDA PGLKISPTVV LIMSLCFIGF VTALHVFGKL
101: YLHKSGSQA

Arabidopsis Description

Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9FKK1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.