Factsheet for Os12t0173366-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G013400.1	Wheat	plastid	79.52	83.54
TraesCS5A01G015200.1	Wheat	plastid	79.52	83.54
TraesCS5D01G021100.1	Wheat	plastid	78.31	83.33
Zm00001d011185_P001	Maize	plastid	80.72	82.72
Os01t0565900-01	Rice	plastid	79.52	82.5
EES00928	Sorghum	plastid	79.52	81.48
TraesCS3D01G208200.1	Wheat	plastid	80.72	80.72
TraesCS3A01G207800.1	Wheat	plastid	80.72	80.72
Zm00001d044231_P001	Maize	plastid	78.31	80.25
TraesCS3B01G234900.1	Wheat	plastid	80.72	79.76
HORVU3Hr1G048610.1	Barley	endoplasmic reticulum	79.52	79.52
Zm00001d044237_P001	Maize	plastid	74.7	76.54
KRH65413	Soybean	endoplasmic reticulum	61.45	62.2
KRH76131	Soybean	plastid	61.45	62.2
VIT_05s0094g00210.t01	Wine grape	mitochondrion	48.19	59.7
AT3G60540.2	Thale cress	plastid	57.83	59.26
PGSC0003DMT400018011	Potato	mitochondrion	59.04	58.33
CDY27395	Canola	mitochondrion, plastid	55.42	57.5
AT2G45070.3	Thale cress	plastid	56.63	57.32
CDX83408	Canola	plastid	55.42	56.1
Bra000368.1-P	Field mustard	plastid	55.42	56.1
CDX74708	Canola	plastid	54.22	54.22
Bra004887.1-P	Field mustard	plastid	54.22	54.22
CDY37026	Canola	plastid	53.01	53.01
Bra040326.1-P	Field mustard	plastid	53.01	53.01
CDY18954	Canola	plastid	51.81	51.19
VIT_15s0021g02620.t01	Wine grape	plastid	60.24	44.64
GSMUA_Achr7P24220_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	67.47	40.0
Os11t0104050-01	Rice	plasma membrane	46.99	36.45
Os12t0103300-01	Rice	plastid	44.58	36.27
VIT_15s0021g02490.t01	Wine grape	cytosol	62.65	33.12
VIT_05s0094g00170.t01	Wine grape	cytosol	56.63	26.86

Protein Annotations

MapMan:23.3.1.3.2	EntrezGene:9266625	ProteinID:ABA96581.1	EMBL:AK240894	ProteinID:BAH95540.1	ProteinID:BAT16085.1
ProteinID:EAZ19806.1	GO:GO:0003674	GO:GO:0005086	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005784
GO:GO:0006616	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0015450
GO:GO:0016020	GO:GO:0016021	GO:GO:0031204	GO:GO:0031205	EnsemblPlantsGene:Os12g0173366	EnsemblPlants:Os12t0173366-01
PFAM:PF03911	PIRSF:PIRSF006398	PANTHER:PTHR13509	PANTHER:PTHR13509:SF2	UniProt:Q2QX17	InterPro:Sec61-beta/Sbh
InterPro:SecG/Sec61-beta/Sbh	TMHMM:TMhelix	UniParc:UPI0000681960	RefSeq:XP_015618728.1	SEG:seg	:

Description

Preprotein translocase Sec, Sec61-beta subunit, eukarya domain containing protein. (Os12t0173366-01)

Coordinates

chr12:+:3718814..3720267

Molecular Weight (calculated)

8452.2 Da

IEP (calculated)

11.393

GRAVY (calculated)

0.095

Length

83 amino acids

Sequence
(BLAST)

1: MPANGDGPAR GSAAAAASLR RRRTTGGAGA GARGGTSTML QFYTEEAAGC KMSPNAVLIM SIGFFAVVAL LHVFGKLYRT SSN

Best Arabidopsis Sequence Match ( AT3G60540.2 )
(BLAST)

1: MVGGGAPQRG SAAATASMRR RKPAGGSSSA GGGAGTMLQF YTDDAPGLKI SPNVVLIMSI GFIAFVAVLH VMGKLYFVKS K

Arabidopsis Description

Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9M206]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.