Factsheet for VIT_15s0021g02490.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76131	Soybean	plastid	44.59	85.37
KRH65413	Soybean	endoplasmic reticulum	44.59	85.37
CDY27395	Canola	mitochondrion, plastid	40.13	78.75
Bra000368.1-P	Field mustard	plastid	40.13	76.83
CDX83408	Canola	plastid	40.13	76.83
PGSC0003DMT400018011	Potato	mitochondrion	40.76	76.19
VIT_05s0094g00210.t01	Wine grape	mitochondrion	32.48	76.12
Bra004887.1-P	Field mustard	plastid	40.13	75.9
CDX74708	Canola	plastid	40.13	75.9
VIT_15s0021g02620.t01	Wine grape	plastid	54.14	75.89
AT2G45070.3	Thale cress	plastid	39.49	75.61
TraesCS5B01G013400.1	Wheat	plastid	36.31	72.15
TraesCS5A01G015200.1	Wheat	plastid	36.31	72.15
CDY18954	Canola	plastid	38.22	71.43
Zm00001d011185_P001	Maize	plastid	36.31	70.37
AT3G60540.2	Thale cress	plastid	36.31	70.37
Os01t0565900-01	Rice	plastid	35.67	70.0
TraesCS5D01G021100.1	Wheat	plastid	34.39	69.23
EES00928	Sorghum	plastid	35.67	69.14
Zm00001d044231_P001	Maize	plastid	35.67	69.14
CDY37026	Canola	plastid	36.31	68.67
Bra040326.1-P	Field mustard	plastid	36.31	68.67
TraesCS3A01G207800.1	Wheat	plastid	35.67	67.47
TraesCS3D01G208200.1	Wheat	plastid	35.67	67.47
HORVU3Hr1G048610.1	Barley	endoplasmic reticulum	35.03	66.27
Zm00001d044237_P001	Maize	plastid	33.76	65.43
TraesCS3B01G234900.1	Wheat	plastid	34.39	64.29
Os12t0173366-01	Rice	plastid	33.12	62.65
GSMUA_Achr9P04740_001	Banana	plastid	31.21	60.49
VIT_13s0019g04080.t01	Wine grape	plastid	31.85	46.3
GSMUA_Achr7P24220_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	38.22	42.86
VIT_05s0094g00170.t01	Wine grape	cytosol	43.95	39.43

Protein Annotations

EntrezGene:100241050	wikigene:100241050	MapMan:23.3.1.3.2	Gene3D:3.20.20.80	ProteinID:CCB43849	ProteinID:CCB43849.1
UniProt:F6GV67	EMBL:FN594952	GO:GO:0003674	GO:GO:0005086	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005784	GO:GO:0006616	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015450
GO:GO:0016020	GO:GO:0016021	GO:GO:0031204	GO:GO:0031205	GO:GO:0065009	EntrezGene:LOC100241050
wikigene:LOC100241050	PFAM:PF03911	PANTHER:PTHR13509	PANTHER:PTHR13509:SF2	InterPro:Sec61-beta/Sbh	InterPro:SecG/Sec61-beta/Sbh
TMHMM:TMhelix	UniParc:UPI0002109A0C	ArrayExpress:VIT_15s0021g02490	EnsemblPlantsGene:VIT_15s0021g02490	EnsemblPlants:VIT_15s0021g02490.t01	RefSeq:XP_002277890
RefSeq:XP_002277890.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr15:-:13472079..13484017

Molecular Weight (calculated)

17157.7 Da

IEP (calculated)

9.741

GRAVY (calculated)

0.043

Length

157 amino acids

Sequence
(BLAST)

001: MTWCIHDMTN SHKCAAPWKI LNKNIAPIIV NIYPFLSLYG NGNFPFDYAF FDGPIIHEVK TRNSDRDSLD FEASKMVQNG AAPPRGSAAA AASLRRRRTT
101: SGATAGGASG NMLQFYTDDA PGLKISPNVV LVMSIGFIAF VAILHVMGKL YFVRKEA

Best Arabidopsis Sequence Match ( AT3G60540.2 )
(BLAST)

1: MVGGGAPQRG SAAATASMRR RKPAGGSSSA GGGAGTMLQF YTDDAPGLKI SPNVVLIMSI GFIAFVAVLH VMGKLYFVKS K

Arabidopsis Description

Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9M206]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.