Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G013400.1 | Wheat | plastid | 92.31 | 91.14 |
| TraesCS5A01G015200.1 | Wheat | plastid | 92.31 | 91.14 |
| TraesCS3D01G208200.1 | Wheat | plastid | 94.87 | 89.16 |
| EES00928 | Sorghum | plastid | 92.31 | 88.89 |
| HORVU3Hr1G048610.1 | Barley | endoplasmic reticulum | 93.59 | 87.95 |
| Zm00001d044231_P001 | Maize | plastid | 91.03 | 87.65 |
| Os01t0565900-01 | Rice | plastid | 88.46 | 86.25 |
| Zm00001d011185_P001 | Maize | plastid | 88.46 | 85.19 |
| Zm00001d044237_P001 | Maize | plastid | 84.62 | 81.48 |
| Os12t0173366-01 | Rice | plastid | 83.33 | 78.31 |
| KRH76131 | Soybean | plastid | 66.67 | 63.41 |
| KRH65413 | Soybean | endoplasmic reticulum | 66.67 | 63.41 |
| CDY27395 | Canola | mitochondrion, plastid | 64.1 | 62.5 |
| AT2G45070.3 | Thale cress | plastid | 65.38 | 62.2 |
| CDX83408 | Canola | plastid | 64.1 | 60.98 |
| Bra000368.1-P | Field mustard | plastid | 64.1 | 60.98 |
| AT3G60540.2 | Thale cress | plastid | 61.54 | 59.26 |
| CDX74708 | Canola | plastid | 62.82 | 59.04 |
| Bra004887.1-P | Field mustard | plastid | 62.82 | 59.04 |
| VIT_05s0094g00210.t01 | Wine grape | mitochondrion | 50.0 | 58.21 |
| Bra040326.1-P | Field mustard | plastid | 58.97 | 55.42 |
| CDY37026 | Canola | plastid | 58.97 | 55.42 |
| CDY18954 | Canola | plastid | 58.97 | 54.76 |
| PGSC0003DMT400018011 | Potato | mitochondrion | 58.97 | 54.76 |
| VIT_15s0021g02620.t01 | Wine grape | plastid | 66.67 | 46.43 |
| GSMUA_Achr7P24220_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 76.92 | 42.86 |
| TraesCS4D01G130200.1 | Wheat | golgi | 51.28 | 36.04 |
| TraesCS5D01G160200.1 | Wheat | plastid | 50.0 | 34.82 |
| VIT_15s0021g02490.t01 | Wine grape | cytosol | 69.23 | 34.39 |
| VIT_05s0094g00170.t01 | Wine grape | cytosol | 61.54 | 27.43 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G021100.1 | EnsemblPlantsGene:TraesCS5D01G021100 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005784 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 |
| InterPro:Sec61-beta/Sbh | InterPro:SecG/Sec61-beta/Sbh | PANTHER:PTHR13509 | PANTHER:PTHR13509:SF2 | PFAM:PF03911 | PIRSF:PIRSF006398 |
| SEG:seg | TMHMM:TMhelix | MapMan:23.3.1.3.2 | : | : | : |
Description
No Description!
Coordinates
chr5D:-:13789632..13789868
Molecular Weight (calculated)
7943.7 Da
IEP (calculated)
11.821
GRAVY (calculated)
0.372
Length
78 amino acids
Sequence
(BLAST)
(BLAST)
1: MVINGDALAR GSAAAAASLR RRRTTSGAAG GGGGASTMLQ FYTDEAAGRK MSPNAVLIMS IGFVAVVAVL HVFGKLYR
1: MVGGGAPQRG SAAATASMRR RKPAGGSSSA GGGAGTMLQF YTDDAPGLKI SPNVVLIMSI GFIAFVAVLH VMGKLYFVKS K
Arabidopsis Description
Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9M206]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.