Factsheet for PGSC0003DMT400018011

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
mitochondrion 4
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76131	Soybean	plastid	80.95	82.93
KRH65413	Soybean	endoplasmic reticulum	80.95	82.93
CDY27395	Canola	mitochondrion, plastid	75.0	78.75
Bra000368.1-P	Field mustard	plastid	75.0	76.83
CDX83408	Canola	plastid	75.0	76.83
AT3G60540.2	Thale cress	plastid	71.43	74.07
CDY18954	Canola	plastid	72.62	72.62
CDY37026	Canola	plastid	71.43	72.29
CDX74708	Canola	plastid	71.43	72.29
Bra040326.1-P	Field mustard	plastid	71.43	72.29
Bra004887.1-P	Field mustard	plastid	71.43	72.29
AT2G45070.3	Thale cress	plastid	69.05	70.73
TraesCS5B01G013400.1	Wheat	plastid	60.71	64.56
TraesCS5A01G015200.1	Wheat	plastid	60.71	64.56
GSMUA_Achr9P04740_001	Banana	plastid	61.9	64.2
VIT_05s0094g00210.t01	Wine grape	mitochondrion	51.19	64.18
Zm00001d011185_P001	Maize	plastid	59.52	61.73
Os01t0565900-01	Rice	plastid	58.33	61.25
TraesCS3B01G234900.1	Wheat	plastid	60.71	60.71
Zm00001d044231_P001	Maize	plastid	57.14	59.26
TraesCS3A01G207800.1	Wheat	plastid	58.33	59.04
TraesCS3D01G208200.1	Wheat	plastid	58.33	59.04
Os12t0173366-01	Rice	plastid	58.33	59.04
TraesCS5D01G021100.1	Wheat	plastid	54.76	58.97
EES00928	Sorghum	plastid	55.95	58.02
Zm00001d044237_P001	Maize	plastid	55.95	58.02
HORVU3Hr1G048610.1	Barley	endoplasmic reticulum	57.14	57.83
VIT_15s0021g02620.t01	Wine grape	plastid	76.19	57.14
PGSC0003DMT400051074	Potato	mitochondrion, plastid	47.62	51.28
PGSC0003DMT400090964	Potato	plastid	54.76	42.99
VIT_15s0021g02490.t01	Wine grape	cytosol	76.19	40.76
GSMUA_Achr7P24220_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	60.71	36.43
VIT_05s0094g00170.t01	Wine grape	cytosol	72.62	34.86

Protein Annotations

EntrezGene:102591878	EntrezGene:102592209	MapMan:23.3.1.3.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005784	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	UniProt:M1A9W3	PFAM:PF03911	EnsemblPlantsGene:PGSC0003DMG400006994
PGSC:PGSC0003DMG400006994	EnsemblPlants:PGSC0003DMT400018011	PIRSF:PIRSF006398	PANTHER:PTHR13509	PANTHER:PTHR13509:SF2	InterPro:Sec61-beta/Sbh
InterPro:SecG/Sec61-beta/Sbh	TMHMM:TMhelix	UniParc:UPI000294CAE1	RefSeq:XP_006345523.1	RefSeq:XP_006345524.1	SEG:seg

Description

Protein transport protein Sec61 subunit beta [Source:PGSC_GENE;Acc:PGSC0003DMG400006994]

Coordinates

chr5:-:45403408..45405672

Molecular Weight (calculated)

8451.4 Da

IEP (calculated)

11.514

GRAVY (calculated)

0.312

Length

84 amino acids

Sequence
(BLAST)

1: MALGGGGPQR GTAAAAAANL RRRKTGGAGG AAGGAGGTML QFYTDDSPGL KISPNVVLVM SIGFIAFVAI LHVMGKLYFV RREG

Best Arabidopsis Sequence Match ( AT3G60540.2 )
(BLAST)

1: MVGGGAPQRG SAAATASMRR RKPAGGSSSA GGGAGTMLQF YTDDAPGLKI SPNVVLIMSI GFIAFVAVLH VMGKLYFVKS K

Arabidopsis Description

Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9M206]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.