Factsheet for Os01t0565900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044231_P001	Maize	plastid	91.25	90.12
EES00928	Sorghum	plastid	91.25	90.12
TraesCS5D01G021100.1	Wheat	plastid	86.25	88.46
TraesCS3A01G207800.1	Wheat	plastid	91.25	87.95
TraesCS3D01G208200.1	Wheat	plastid	91.25	87.95
TraesCS3B01G234900.1	Wheat	plastid	91.25	86.9
HORVU3Hr1G048610.1	Barley	endoplasmic reticulum	90.0	86.75
Zm00001d011185_P001	Maize	plastid	87.5	86.42
TraesCS5B01G013400.1	Wheat	plastid	85.0	86.08
TraesCS5A01G015200.1	Wheat	plastid	85.0	86.08
Zm00001d044237_P001	Maize	plastid	86.25	85.19
Os12t0173366-01	Rice	plastid	82.5	79.52
KRH65413	Soybean	endoplasmic reticulum	66.25	64.63
KRH76131	Soybean	plastid	66.25	64.63
CDY27395	Canola	mitochondrion, plastid	63.75	63.75
CDX83408	Canola	plastid	63.75	62.2
Bra000368.1-P	Field mustard	plastid	63.75	62.2
AT2G45070.3	Thale cress	plastid	62.5	60.98
AT3G60540.2	Thale cress	plastid	61.25	60.49
CDX74708	Canola	plastid	62.5	60.24
Bra004887.1-P	Field mustard	plastid	62.5	60.24
PGSC0003DMT400018011	Potato	mitochondrion	61.25	58.33
CDY18954	Canola	plastid	61.25	58.33
VIT_05s0094g00210.t01	Wine grape	mitochondrion	47.5	56.72
CDY37026	Canola	plastid	58.75	56.63
Bra040326.1-P	Field mustard	plastid	58.75	56.63
VIT_15s0021g02620.t01	Wine grape	plastid	70.0	50.0
GSMUA_Achr7P24220_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	77.5	44.29
Os11t0104050-01	Rice	plasma membrane	51.25	38.32
Os12t0103300-01	Rice	plastid	48.75	38.24
VIT_15s0021g02490.t01	Wine grape	cytosol	70.0	35.67
VIT_05s0094g00170.t01	Wine grape	cytosol	62.5	28.57

Protein Annotations

MapMan:23.3.1.3.2	EntrezGene:4327929	EMBL:AK065822	ProteinID:BAF05273.1	ProteinID:BAS72750.1	ProteinID:EAZ12367.1
GO:GO:0003674	GO:GO:0005086	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005784	GO:GO:0006616
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0015450	GO:GO:0016020
GO:GO:0016021	GO:GO:0031204	GO:GO:0031205	EnsemblPlantsGene:Os01g0565900	EnsemblPlants:Os01t0565900-01	PFAM:PF03911
PIRSF:PIRSF006398	PANTHER:PTHR13509	PANTHER:PTHR13509:SF2	UniProt:Q0JLV5	InterPro:Sec61-beta/Sbh	InterPro:SecG/Sec61-beta/Sbh
TMHMM:TMhelix	UniParc:UPI00000A6E6B	RefSeq:XP_015650877.1	SEG:seg	:	:

Description

Similar to Protein transport protein Sec61 beta subunit. (Os01t0565900-01);Non-protein coding transcript. (Os01t0565900-02)

Coordinates

chr1:+:21631182..21633086

Molecular Weight (calculated)

8177.9 Da

IEP (calculated)

11.821

GRAVY (calculated)

0.172

Length

80 amino acids

Sequence
(BLAST)

1: MVANGDAPAR GSAAAAASLR RRRTTSSGTG GGGASTMLQF YTDEAAGRKM SPNSVLIMSI GFIAVVALLH VFGKLYRTSA

Best Arabidopsis Sequence Match ( AT3G60540.2 )
(BLAST)

1: MVGGGAPQRG SAAATASMRR RKPAGGSSSA GGGAGTMLQF YTDDAPGLKI SPNVVLIMSI GFIAFVAVLH VMGKLYFVKS K

Arabidopsis Description

Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9M206]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.