Factsheet for Zm00001d044237_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044231_P001	Maize	plastid	93.83	93.83
EES00928	Sorghum	plastid	92.59	92.59
Zm00001d011185_P001	Maize	plastid	87.65	87.65
TraesCS3D01G208200.1	Wheat	plastid	88.89	86.75
TraesCS3A01G207800.1	Wheat	plastid	88.89	86.75
Os01t0565900-01	Rice	plastid	85.19	86.25
HORVU3Hr1G048610.1	Barley	endoplasmic reticulum	87.65	85.54
TraesCS5D01G021100.1	Wheat	plastid	81.48	84.62
TraesCS3B01G234900.1	Wheat	plastid	86.42	83.33
TraesCS5B01G013400.1	Wheat	plastid	80.25	82.28
TraesCS5A01G015200.1	Wheat	plastid	80.25	82.28
Os12t0173366-01	Rice	plastid	76.54	74.7
KRH65413	Soybean	endoplasmic reticulum	62.96	62.2
KRH76131	Soybean	plastid	62.96	62.2
CDY27395	Canola	mitochondrion, plastid	60.49	61.25
Bra000368.1-P	Field mustard	plastid	60.49	59.76
AT2G45070.3	Thale cress	plastid	60.49	59.76
CDX83408	Canola	plastid	60.49	59.76
VIT_05s0094g00210.t01	Wine grape	mitochondrion	49.38	59.7
CDX74708	Canola	plastid	59.26	57.83
Bra004887.1-P	Field mustard	plastid	59.26	57.83
PGSC0003DMT400018011	Potato	mitochondrion	58.02	55.95
AT3G60540.2	Thale cress	plastid	55.56	55.56
CDY18954	Canola	plastid	55.56	53.57
Bra040326.1-P	Field mustard	plastid	54.32	53.01
CDY37026	Canola	plastid	54.32	53.01
VIT_15s0021g02620.t01	Wine grape	plastid	62.96	45.54
GSMUA_Achr7P24220_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	76.54	44.29
Zm00001d035610_P001	Maize	plastid	50.62	37.96
Zm00001d011050_P001	Maize	plastid	48.15	36.45
VIT_15s0021g02490.t01	Wine grape	cytosol	65.43	33.76
VIT_05s0094g00170.t01	Wine grape	cytosol	59.26	27.43

Protein Annotations

EntrezGene:103651507	MapMan:23.3.1.3.2	UniProt:A0A1D6NJV0	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005784	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	ProteinID:ONM40524.1	PFAM:PF03911	PIRSF:PIRSF006398
PANTHER:PTHR13509	PANTHER:PTHR13509:SF2	InterPro:Sec61-beta/Sbh	InterPro:SecG/Sec61-beta/Sbh	TMHMM:TMhelix	UniParc:UPI0002210308
EnsemblPlantsGene:Zm00001d044237	EnsemblPlants:Zm00001d044237_P001	EnsemblPlants:Zm00001d044237_T001	SEG:seg	:	:

Description

Protein transport protein Sec61 subunit beta

Coordinates

chr3:+:222758012..222758257

Molecular Weight (calculated)

8352.2 Da

IEP (calculated)

11.821

GRAVY (calculated)

0.173

Length

81 amino acids

Sequence
(BLAST)

1: MVANGDTPAR GSMAAAASLR RRRTTSAAAA GGGGASSMLQ FYTDEAAGRK MSPNTVLIMG IGFIAIVAML HVFGKLYRTS N

Best Arabidopsis Sequence Match ( AT3G60540.2 )
(BLAST)

1: MVGGGAPQRG SAAATASMRR RKPAGGSSSA GGGAGTMLQF YTDDAPGLKI SPNVVLIMSI GFIAFVAVLH VMGKLYFVKS K

Arabidopsis Description

Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9M206]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.