CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
endoplasmic reticulum 2
mitochondrion 3
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040326.1-P	Field mustard	plastid	100.0	100.0
CDY18954	Canola	plastid	91.57	90.48
AT2G45070.3	Thale cress	plastid	83.13	84.15
CDY27395	Canola	mitochondrion, plastid	80.72	83.75
CDX83408	Canola	plastid	80.72	81.71
CDX74708	Canola	plastid	79.52	79.52
KRH65413	Soybean	endoplasmic reticulum	71.08	71.95
KRH76131	Soybean	plastid	71.08	71.95
PGSC0003DMT400018011	Potato	mitochondrion	72.29	71.43
GSMUA_Achr9P04740_001	Banana	plastid	62.65	64.2
TraesCS5B01G013400.1	Wheat	plastid	57.83	60.76
TraesCS5A01G015200.1	Wheat	plastid	57.83	60.76
TraesCS3B01G234900.1	Wheat	plastid	60.24	59.52
Zm00001d011185_P001	Maize	plastid	57.83	59.26
EES00928	Sorghum	plastid	57.83	59.26
TraesCS5D01G021100.1	Wheat	plastid	55.42	58.97
Os01t0565900-01	Rice	plastid	56.63	58.75
Zm00001d044231_P001	Maize	plastid	56.63	58.02
HORVU3Hr1G048610.1	Barley	endoplasmic reticulum	57.83	57.83
TraesCS3A01G207800.1	Wheat	plastid	57.83	57.83
TraesCS3D01G208200.1	Wheat	plastid	57.83	57.83
Zm00001d044237_P001	Maize	plastid	53.01	54.32
Os12t0173366-01	Rice	plastid	53.01	53.01
VIT_05s0094g00210.t01	Wine grape	mitochondrion	42.17	52.24
VIT_15s0021g02620.t01	Wine grape	plastid	69.88	51.79
CDX88759	Canola	plastid	60.24	45.87
CDY67667	Canola	plastid	59.04	44.95
CDY31544	Canola	plastid	59.04	44.95
CDX80167	Canola	plastid	59.04	44.95
VIT_15s0021g02490.t01	Wine grape	cytosol	68.67	36.31
GSMUA_Achr7P24220_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	60.24	35.71
VIT_05s0094g00170.t01	Wine grape	cytosol	61.45	29.14

Protein Annotations

MapMan:23.3.1.3.2	GO:A0A078HH59	UniProt:A0A078HH59	EnsemblPlants:CDY37026	ProteinID:CDY37026	ProteinID:CDY37026.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005784
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:GSBRNA2T00063229001	PFAM:PF03911	PIRSF:PIRSF006398	PANTHER:PTHR13509	PANTHER:PTHR13509:SF2	InterPro:Sec61-beta/Sbh
InterPro:SecG/Sec61-beta/Sbh	TMHMM:TMhelix	UniParc:UPI0002544257	SEG:seg	:	:

Description

BnaA04g26040DProtein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078HH59]

Coordinates

chrLK032390:-:62128..63009

Molecular Weight (calculated)

8202.1 Da

IEP (calculated)

11.238

GRAVY (calculated)

0.371

Length

83 amino acids

Sequence
(BLAST)

1: MVGSGAPQRG SAAAAASMRR RKPSGSGGGG ASGGGGAAGS MLQFYTDDAP GLKISPNVVL VMSIGFIAFV AVLHVMGKLY FVK

Best Arabidopsis Sequence Match ( AT2G45070.1 )
(BLAST)

1: MVGSGAPQRG SAAATASMRR RKPTSGAGGG GASGGAAGSM LQFYTDDAPG LKISPNVVLI MSIGFIAFVA VLHVMGKLYF VK

Arabidopsis Description

SEC61 BETAProtein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178VTT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.