Factsheet for VIT_05s0094g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76131	Soybean	plastid	36.0	76.83
KRH65413	Soybean	endoplasmic reticulum	36.0	76.83
PGSC0003DMT400018011	Potato	mitochondrion	34.86	72.62
CDY27395	Canola	mitochondrion, plastid	32.0	70.0
VIT_05s0094g00210.t01	Wine grape	mitochondrion	26.29	68.66
Bra000368.1-P	Field mustard	plastid	32.0	68.29
CDX83408	Canola	plastid	32.0	68.29
AT2G45070.3	Thale cress	plastid	31.43	67.07
Bra004887.1-P	Field mustard	plastid	31.43	66.27
CDX74708	Canola	plastid	31.43	66.27
CDY18954	Canola	plastid	31.43	65.48
TraesCS5B01G013400.1	Wheat	plastid	28.57	63.29
TraesCS5A01G015200.1	Wheat	plastid	28.57	63.29
AT3G60540.2	Thale cress	plastid	29.14	62.96
Os01t0565900-01	Rice	plastid	28.57	62.5
Zm00001d044231_P001	Maize	plastid	28.57	61.73
Zm00001d011185_P001	Maize	plastid	28.57	61.73
TraesCS5D01G021100.1	Wheat	plastid	27.43	61.54
Bra040326.1-P	Field mustard	plastid	29.14	61.45
CDY37026	Canola	plastid	29.14	61.45
VIT_15s0021g02620.t01	Wine grape	plastid	38.86	60.71
EES00928	Sorghum	plastid	28.0	60.49
Zm00001d044237_P001	Maize	plastid	27.43	59.26
GSMUA_Achr9P04740_001	Banana	plastid	27.43	59.26
TraesCS3D01G208200.1	Wheat	plastid	28.0	59.04
TraesCS3A01G207800.1	Wheat	plastid	28.0	59.04
TraesCS3B01G234900.1	Wheat	plastid	28.0	58.33
HORVU3Hr1G048610.1	Barley	endoplasmic reticulum	27.43	57.83
Os12t0173366-01	Rice	plastid	26.86	56.63
VIT_15s0021g02490.t01	Wine grape	cytosol	39.43	43.95
VIT_13s0019g04080.t01	Wine grape	plastid	25.71	41.67
GSMUA_Achr7P24220_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	28.57	35.71

Protein Annotations

MapMan:23.3.1.3.2	ProteinID:CCB49359	ProteinID:CCB49359.1	UniProt:F6HB06	EMBL:FN595507	GO:GO:0003674
GO:GO:0005086	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005784	GO:GO:0006616	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015450	GO:GO:0016020	GO:GO:0016021	GO:GO:0031204
GO:GO:0031205	GO:GO:0065009	PFAM:PF03911	PANTHER:PTHR13509	PANTHER:PTHR13509:SF2	InterPro:Sec61-beta/Sbh
InterPro:SecG/Sec61-beta/Sbh	TMHMM:TMhelix	UniParc:UPI0002109286	ArrayExpress:VIT_05s0094g00170	EnsemblPlantsGene:VIT_05s0094g00170	EnsemblPlants:VIT_05s0094g00170.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:23520466..23524730

Molecular Weight (calculated)

19359.7 Da

IEP (calculated)

10.370

GRAVY (calculated)

0.127

Length

175 amino acids

Sequence
(BLAST)

001: MTKLPSIHDE FHVMRIGISV NFKSQVHVEG ARMLLSEEFK SATDLTTSSY VYEKAKFTMA YWLERSWDTA SLHLCLLSPA TLPIQKIILS VIRNGSKWSC
101: SPKRSAAAAA SLRRRRTTSV GAAGGASGNM LQFYTDDVPG LKISPNVVLV MSIGFIAFVA TLHVMGKLYF VRREA

Best Arabidopsis Sequence Match ( AT2G45070.1 )
(BLAST)

1: MVGSGAPQRG SAAATASMRR RKPTSGAGGG GASGGAAGSM LQFYTDDAPG LKISPNVVLI MSIGFIAFVA VLHVMGKLYF VK

Arabidopsis Description

SEC61 BETAProtein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178VTT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.