Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G208200.1 | Wheat | plastid | 96.43 | 97.59 |
| TraesCS3A01G207800.1 | Wheat | plastid | 96.43 | 97.59 |
| HORVU3Hr1G048610.1 | Barley | endoplasmic reticulum | 95.24 | 96.39 |
| EES00928 | Sorghum | plastid | 88.1 | 91.36 |
| Os01t0565900-01 | Rice | plastid | 86.9 | 91.25 |
| Zm00001d044231_P001 | Maize | plastid | 86.9 | 90.12 |
| TraesCS5B01G013400.1 | Wheat | plastid | 82.14 | 87.34 |
| Zm00001d044237_P001 | Maize | plastid | 83.33 | 86.42 |
| Zm00001d011185_P001 | Maize | plastid | 83.33 | 86.42 |
| Os12t0173366-01 | Rice | plastid | 79.76 | 80.72 |
| CDY27395 | Canola | mitochondrion, plastid | 63.1 | 66.25 |
| KRH65413 | Soybean | endoplasmic reticulum | 64.29 | 65.85 |
| KRH76131 | Soybean | plastid | 64.29 | 65.85 |
| Bra000368.1-P | Field mustard | plastid | 63.1 | 64.63 |
| CDX83408 | Canola | plastid | 63.1 | 64.63 |
| AT3G60540.2 | Thale cress | plastid | 60.71 | 62.96 |
| Bra004887.1-P | Field mustard | plastid | 61.9 | 62.65 |
| CDX74708 | Canola | plastid | 61.9 | 62.65 |
| AT2G45070.3 | Thale cress | plastid | 60.71 | 62.2 |
| PGSC0003DMT400018011 | Potato | mitochondrion | 60.71 | 60.71 |
| Bra040326.1-P | Field mustard | plastid | 59.52 | 60.24 |
| CDY37026 | Canola | plastid | 59.52 | 60.24 |
| CDY18954 | Canola | plastid | 59.52 | 59.52 |
| VIT_05s0094g00210.t01 | Wine grape | mitochondrion | 46.43 | 58.21 |
| VIT_15s0021g02620.t01 | Wine grape | plastid | 64.29 | 48.21 |
| GSMUA_Achr7P24220_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 79.76 | 47.86 |
| TraesCS4B01G135500.1 | Wheat | plastid | 48.81 | 36.94 |
| TraesCS5B01G153400.1 | Wheat | plastid | 47.62 | 35.71 |
| VIT_15s0021g02490.t01 | Wine grape | cytosol | 64.29 | 34.39 |
| VIT_05s0094g00170.t01 | Wine grape | cytosol | 58.33 | 28.0 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G234900.1 | EnsemblPlantsGene:TraesCS3B01G234900 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005784 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 |
| InterPro:Sec61-beta/Sbh | InterPro:SecG/Sec61-beta/Sbh | PANTHER:PTHR13509 | PANTHER:PTHR13509:SF2 | PFAM:PF03911 | PIRSF:PIRSF006398 |
| SEG:seg | TMHMM:TMhelix | MapMan:23.3.1.3.2 | : | : | : |
Description
No Description!
Coordinates
chr3B:+:367480289..367480543
Molecular Weight (calculated)
8367.1 Da
IEP (calculated)
11.821
GRAVY (calculated)
0.200
Length
84 amino acids
Sequence
(BLAST)
(BLAST)
1: MVANGDAPAR GSAAAAASLR RRRTTGGGAA AGGGGGGAST MLQFYTDEAA GRKMSPNAVL IMSIGFIAVV AVLHVFGKLY RTPN
1: MVGSGAPQRG SAAATASMRR RKPTSGAGGG GASGGAAGSM LQFYTDDAPG LKISPNVVLI MSIGFIAFVA VLHVMGKLYF VK
Arabidopsis Description
SEC61 BETAProtein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178VTT1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.