Factsheet for Zm00001d011185_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G013400.1	Wheat	plastid	91.36	93.67
TraesCS5A01G015200.1	Wheat	plastid	91.36	93.67
Zm00001d044231_P001	Maize	plastid	92.59	92.59
EES00928	Sorghum	plastid	91.36	91.36
TraesCS5D01G021100.1	Wheat	plastid	85.19	88.46
Zm00001d044237_P001	Maize	plastid	87.65	87.65
Os01t0565900-01	Rice	plastid	86.42	87.5
TraesCS3D01G208200.1	Wheat	plastid	88.89	86.75
TraesCS3A01G207800.1	Wheat	plastid	88.89	86.75
HORVU3Hr1G048610.1	Barley	endoplasmic reticulum	87.65	85.54
TraesCS3B01G234900.1	Wheat	plastid	86.42	83.33
Os12t0173366-01	Rice	plastid	82.72	80.72
CDY27395	Canola	mitochondrion, plastid	64.2	65.0
KRH65413	Soybean	endoplasmic reticulum	65.43	64.63
KRH76131	Soybean	plastid	65.43	64.63
Bra000368.1-P	Field mustard	plastid	64.2	63.41
AT2G45070.3	Thale cress	plastid	64.2	63.41
CDX83408	Canola	plastid	64.2	63.41
AT3G60540.2	Thale cress	plastid	62.96	62.96
VIT_05s0094g00210.t01	Wine grape	mitochondrion	50.62	61.19
CDX74708	Canola	plastid	61.73	60.24
Bra004887.1-P	Field mustard	plastid	61.73	60.24
PGSC0003DMT400018011	Potato	mitochondrion	61.73	59.52
Bra040326.1-P	Field mustard	plastid	59.26	57.83
CDY37026	Canola	plastid	59.26	57.83
CDY18954	Canola	plastid	58.02	55.95
VIT_15s0021g02620.t01	Wine grape	plastid	67.9	49.11
GSMUA_Achr7P24220_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	77.78	45.0
Zm00001d035610_P001	Maize	plastid	50.62	37.96
Zm00001d011050_P001	Maize	plastid	48.15	36.45
VIT_15s0021g02490.t01	Wine grape	cytosol	70.37	36.31
VIT_05s0094g00170.t01	Wine grape	cytosol	61.73	28.57

Protein Annotations

MapMan:23.3.1.3.2	ProteinID:AQK96118.1	UniProt:B4FEC8	EMBL:BT035466	EMBL:EU958601	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005784	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	PFAM:PF03911
PIRSF:PIRSF006398	PANTHER:PTHR13509	PANTHER:PTHR13509:SF2	InterPro:Sec61-beta/Sbh	InterPro:SecG/Sec61-beta/Sbh	TMHMM:TMhelix
UniParc:UPI00017B687F	EnsemblPlantsGene:Zm00001d011185	EnsemblPlants:Zm00001d011185_P001	EnsemblPlants:Zm00001d011185_T001	SEG:seg	:

Description

Protein transport protein Sec61 subunit beta

Coordinates

chr8:+:142292769..142293158

Molecular Weight (calculated)

8217.9 Da

IEP (calculated)

11.821

GRAVY (calculated)

0.191

Length

81 amino acids

Sequence
(BLAST)

1: MVANGDAPAR GSAAAAASLR RRRTTSGAAA GGGGASSMLQ FYTDEAAGRK MSPNTVLIMS IGFVAVVAVL HVFGKLYRTS N

Best Arabidopsis Sequence Match ( AT3G60540.2 )
(BLAST)

1: MVGGGAPQRG SAAATASMRR RKPAGGSSSA GGGAGTMLQF YTDDAPGLKI SPNVVLIMSI GFIAFVAVLH VMGKLYFVKS K

Arabidopsis Description

Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9M206]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.