Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- endoplasmic reticulum 2
- mitochondrion 3
- cytosol 1
- plasma membrane 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74708 | Canola | plastid | 100.0 | 100.0 |
| Bra000368.1-P | Field mustard | plastid | 87.95 | 89.02 |
| AT2G45070.3 | Thale cress | plastid | 84.34 | 85.37 |
| Bra040326.1-P | Field mustard | plastid | 79.52 | 79.52 |
| KRH76131 | Soybean | plastid | 74.7 | 75.61 |
| KRH65413 | Soybean | endoplasmic reticulum | 74.7 | 75.61 |
| PGSC0003DMT400018011 | Potato | mitochondrion | 72.29 | 71.43 |
| TraesCS5A01G015200.1 | Wheat | plastid | 60.24 | 63.29 |
| TraesCS5B01G013400.1 | Wheat | plastid | 60.24 | 63.29 |
| Zm00001d044231_P001 | Maize | plastid | 61.45 | 62.96 |
| EES00928 | Sorghum | plastid | 61.45 | 62.96 |
| TraesCS5D01G021100.1 | Wheat | plastid | 59.04 | 62.82 |
| VIT_05s0094g00210.t01 | Wine grape | mitochondrion | 50.6 | 62.69 |
| Os01t0565900-01 | Rice | plastid | 60.24 | 62.5 |
| TraesCS3B01G234900.1 | Wheat | plastid | 62.65 | 61.9 |
| Zm00001d011185_P001 | Maize | plastid | 60.24 | 61.73 |
| TraesCS3A01G207800.1 | Wheat | plastid | 61.45 | 61.45 |
| TraesCS3D01G208200.1 | Wheat | plastid | 61.45 | 61.45 |
| HORVU3Hr1G048610.1 | Barley | endoplasmic reticulum | 60.24 | 60.24 |
| Zm00001d044237_P001 | Maize | plastid | 57.83 | 59.26 |
| GSMUA_Achr9P04740_001 | Banana | plastid | 57.83 | 59.26 |
| VIT_15s0021g02620.t01 | Wine grape | plastid | 74.7 | 55.36 |
| Os12t0173366-01 | Rice | plastid | 54.22 | 54.22 |
| Bra002478.1-P | Field mustard | plastid | 61.45 | 46.79 |
| Bra006659.1-P | Field mustard | plastid | 56.63 | 43.12 |
| VIT_15s0021g02490.t01 | Wine grape | cytosol | 75.9 | 40.13 |
| GSMUA_Achr7P24220_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 60.24 | 35.71 |
| VIT_05s0094g00170.t01 | Wine grape | cytosol | 66.27 | 31.43 |
Protein Annotations
| MapMan:23.3.1.3.2 | EnsemblPlantsGene:Bra004887 | EnsemblPlants:Bra004887.1 | EnsemblPlants:Bra004887.1-P | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005784 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | UniProt:M4CL01 | PFAM:PF03911 |
| PIRSF:PIRSF006398 | PANTHER:PTHR13509 | PANTHER:PTHR13509:SF2 | InterPro:Sec61-beta/Sbh | InterPro:SecG/Sec61-beta/Sbh | TMHMM:TMhelix |
| UniParc:UPI0002547F09 | SEG:seg | : | : | : | : |
Description
AT3G60540 (E=1e-018) | sec61beta family protein
Coordinates
chrA05:-:2305445..2305696
Molecular Weight (calculated)
8202.1 Da
IEP (calculated)
11.238
GRAVY (calculated)
0.371
Length
83 amino acids
Sequence
(BLAST)
(BLAST)
1: MVGSGAPQRG SAAAAASMRR RKPSGSGGGA SGGGGGAAGS MLQFYTDDAP GLKISPNVVL VMSIGFIAFV AVLHVMGKLY FVK
1: MVGSGAPQRG SAAATASMRR RKPTSGAGGG GASGGAAGSM LQFYTDDAPG LKISPNVVLI MSIGFIAFVA VLHVMGKLYF VK
Arabidopsis Description
SEC61 BETAProtein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178VTT1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.