Factsheet for Zm00001d044231_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00928	Sorghum	plastid	98.77	98.77
Zm00001d044237_P001	Maize	plastid	93.83	93.83
Zm00001d011185_P001	Maize	plastid	92.59	92.59
Os01t0565900-01	Rice	plastid	90.12	91.25
TraesCS5D01G021100.1	Wheat	plastid	87.65	91.03
TraesCS3D01G208200.1	Wheat	plastid	92.59	90.36
TraesCS3A01G207800.1	Wheat	plastid	92.59	90.36
HORVU3Hr1G048610.1	Barley	endoplasmic reticulum	91.36	89.16
TraesCS5B01G013400.1	Wheat	plastid	85.19	87.34
TraesCS5A01G015200.1	Wheat	plastid	85.19	87.34
TraesCS3B01G234900.1	Wheat	plastid	90.12	86.9
Os12t0173366-01	Rice	plastid	80.25	78.31
CDY27395	Canola	mitochondrion, plastid	65.43	66.25
KRH65413	Soybean	endoplasmic reticulum	66.67	65.85
KRH76131	Soybean	plastid	66.67	65.85
Bra000368.1-P	Field mustard	plastid	65.43	64.63
CDX83408	Canola	plastid	65.43	64.63
AT2G45070.3	Thale cress	plastid	64.2	63.41
Bra004887.1-P	Field mustard	plastid	62.96	61.45
CDX74708	Canola	plastid	62.96	61.45
VIT_05s0094g00210.t01	Wine grape	mitochondrion	49.38	59.7
AT3G60540.2	Thale cress	plastid	59.26	59.26
CDY18954	Canola	plastid	59.26	57.14
PGSC0003DMT400018011	Potato	mitochondrion	59.26	57.14
Bra040326.1-P	Field mustard	plastid	58.02	56.63
CDY37026	Canola	plastid	58.02	56.63
VIT_15s0021g02620.t01	Wine grape	plastid	66.67	48.21
GSMUA_Achr7P24220_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	79.01	45.71
Zm00001d035610_P001	Maize	plastid	53.09	39.81
Zm00001d011050_P001	Maize	plastid	50.62	38.32
VIT_15s0021g02490.t01	Wine grape	cytosol	69.14	35.67
VIT_05s0094g00170.t01	Wine grape	cytosol	61.73	28.57

Protein Annotations

EntrezGene:100285315	MapMan:23.3.1.3.2	UniProt:B6U313	EMBL:BT063500	EMBL:EU971628	EMBL:EU971732
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005784
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021
ProteinID:ONM40516.1	PFAM:PF03911	PIRSF:PIRSF006398	PANTHER:PTHR13509	PANTHER:PTHR13509:SF2	InterPro:Sec61-beta/Sbh
InterPro:SecG/Sec61-beta/Sbh	TMHMM:TMhelix	UniParc:UPI000182E6F4	EnsemblPlantsGene:Zm00001d044231	EnsemblPlants:Zm00001d044231_P001	EnsemblPlants:Zm00001d044231_T001
SEG:seg	:	:	:	:	:

Description

Protein transport protein Sec61 subunit beta

Coordinates

chr3:+:222541223..222541468

Molecular Weight (calculated)

8264.0 Da

IEP (calculated)

11.821

GRAVY (calculated)

0.167

Length

81 amino acids

Sequence
(BLAST)

1: MVANGDAPAR GSAAAAASLR RRRTTSGAAA GGGGASSMLQ FYTDEAAGRK MSPNTVLIMS IGFIAVVAML HVFGKLYRTS N

Best Arabidopsis Sequence Match ( AT3G60540.2 )
(BLAST)

1: MVGGGAPQRG SAAATASMRR RKPAGGSSSA GGGAGTMLQF YTDDAPGLKI SPNVVLIMSI GFIAFVAVLH VMGKLYFVKS K

Arabidopsis Description

Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9M206]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.