CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 2
mitochondrion 2
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000368.1-P	Field mustard	plastid	100.0	100.0
CDY27395	Canola	mitochondrion, plastid	97.56	100.0
CDX74708	Canola	plastid	89.02	87.95
CDY18954	Canola	plastid	84.15	82.14
CDY37026	Canola	plastid	81.71	80.72
KRH65413	Soybean	endoplasmic reticulum	80.49	80.49
KRH76131	Soybean	plastid	80.49	80.49
AT2G45070.3	Thale cress	plastid	79.27	79.27
PGSC0003DMT400018011	Potato	mitochondrion	76.83	75.0
Zm00001d044231_P001	Maize	plastid	64.63	65.43
TraesCS5B01G013400.1	Wheat	plastid	62.2	64.56
TraesCS5A01G015200.1	Wheat	plastid	62.2	64.56
Zm00001d011185_P001	Maize	plastid	63.41	64.2
EES00928	Sorghum	plastid	63.41	64.2
TraesCS5D01G021100.1	Wheat	plastid	60.98	64.1
Os01t0565900-01	Rice	plastid	62.2	63.75
TraesCS3B01G234900.1	Wheat	plastid	64.63	63.1
VIT_05s0094g00210.t01	Wine grape	mitochondrion	51.22	62.69
GSMUA_Achr9P04740_001	Banana	plastid	60.98	61.73
TraesCS3A01G207800.1	Wheat	plastid	62.2	61.45
TraesCS3D01G208200.1	Wheat	plastid	62.2	61.45
Zm00001d044237_P001	Maize	plastid	59.76	60.49
HORVU3Hr1G048610.1	Barley	endoplasmic reticulum	60.98	60.24
VIT_15s0021g02620.t01	Wine grape	plastid	76.83	56.25
Os12t0173366-01	Rice	plastid	56.1	55.42
CDY31544	Canola	plastid	60.98	45.87
CDX80167	Canola	plastid	60.98	45.87
CDY67667	Canola	plastid	57.32	43.12
CDX88759	Canola	plastid	57.32	43.12
VIT_15s0021g02490.t01	Wine grape	cytosol	76.83	40.13
GSMUA_Achr7P24220_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	64.63	37.86
VIT_05s0094g00170.t01	Wine grape	cytosol	68.29	32.0

Protein Annotations

MapMan:23.3.1.3.2	GO:A0A078D821	EnsemblPlants:CDX83408	ProteinID:CDX83408	ProteinID:CDX83408.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005784	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00138979001
PFAM:PF03911	PIRSF:PIRSF006398	PANTHER:PTHR13509	PANTHER:PTHR13509:SF2	InterPro:Sec61-beta/Sbh	InterPro:SecG/Sec61-beta/Sbh
TMHMM:TMhelix	UniParc:UPI000253FE31	SEG:seg	:	:	:

Description

BnaA03g20980D

Coordinates

chrLK031832:+:1427666..1428583

Molecular Weight (calculated)

8205.1 Da

IEP (calculated)

11.238

GRAVY (calculated)

0.371

Length

82 amino acids

Sequence
(BLAST)

1: MVGSGAPQRG SAAAAASMRR RKPSGSSSGG GASGGAAGSM LQFYTDDAPG LKISPNVVLV MSIGFIAFVA VLHVMGKLYF VK

Best Arabidopsis Sequence Match ( AT2G45070.1 )
(BLAST)

1: MVGSGAPQRG SAAATASMRR RKPTSGAGGG GASGGAAGSM LQFYTDDAPG LKISPNVVLI MSIGFIAFVA VLHVMGKLYF VK

Arabidopsis Description

SEC61 BETAProtein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178VTT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.