CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37026	Canola	plastid	90.48	91.57
AT2G45070.3	Thale cress	plastid	86.9	89.02
CDX74708	Canola	plastid	86.9	87.95
CDY27395	Canola	mitochondrion, plastid	82.14	86.25
CDX83408	Canola	plastid	82.14	84.15
KRH76131	Soybean	plastid	72.62	74.39
KRH65413	Soybean	endoplasmic reticulum	72.62	74.39
PGSC0003DMT400018011	Potato	mitochondrion	72.62	72.62
GSMUA_Achr9P04740_001	Banana	plastid	61.9	64.2
Os01t0565900-01	Rice	plastid	58.33	61.25
TraesCS5B01G013400.1	Wheat	plastid	57.14	60.76
TraesCS5A01G015200.1	Wheat	plastid	57.14	60.76
TraesCS3B01G234900.1	Wheat	plastid	59.52	59.52
EES00928	Sorghum	plastid	57.14	59.26
Zm00001d044231_P001	Maize	plastid	57.14	59.26
TraesCS5D01G021100.1	Wheat	plastid	54.76	58.97
VIT_05s0094g00210.t01	Wine grape	mitochondrion	46.43	58.21
Zm00001d011185_P001	Maize	plastid	55.95	58.02
TraesCS3D01G208200.1	Wheat	plastid	57.14	57.83
TraesCS3A01G207800.1	Wheat	plastid	57.14	57.83
HORVU3Hr1G048610.1	Barley	endoplasmic reticulum	55.95	56.63
Zm00001d044237_P001	Maize	plastid	53.57	55.56
VIT_15s0021g02620.t01	Wine grape	plastid	71.43	53.57
Os12t0173366-01	Rice	plastid	51.19	51.81
CDX80167	Canola	plastid	61.9	47.71
CDY31544	Canola	plastid	61.9	47.71
CDY67667	Canola	plastid	55.95	43.12
CDX88759	Canola	plastid	54.76	42.2
VIT_15s0021g02490.t01	Wine grape	cytosol	71.43	38.22
GSMUA_Achr7P24220_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	57.14	34.29
VIT_05s0094g00170.t01	Wine grape	cytosol	65.48	31.43

Protein Annotations

MapMan:23.3.1.3.2	GO:A0A078G0D4	UniProt:A0A078G0D4	EnsemblPlants:CDY18954	ProteinID:CDY18954	ProteinID:CDY18954.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005784
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:GSBRNA2T00006173001	PFAM:PF03911	PIRSF:PIRSF006398	PANTHER:PTHR13509	PANTHER:PTHR13509:SF2	InterPro:Sec61-beta/Sbh
InterPro:SecG/Sec61-beta/Sbh	TMHMM:TMhelix	UniParc:UPI0001CAB272	SEG:seg	:	:

Description

BnaC04g03960DProtein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078G0D4]

Coordinates

chrLK032090:+:637056..637941

Molecular Weight (calculated)

8289.2 Da

IEP (calculated)

11.238

GRAVY (calculated)

0.357

Length

84 amino acids

Sequence
(BLAST)

1: MVGSGAPQRG SAAAAASMRR RKPSGSGSGG GASGGGGAAG SMLQFYTDDA PGLKISPNVV LVMSIGFIAF VAVLHVMGKL YFVK

Best Arabidopsis Sequence Match ( AT2G45070.1 )
(BLAST)

1: MVGSGAPQRG SAAATASMRR RKPTSGAGGG GASGGAAGSM LQFYTDDAPG LKISPNVVLI MSIGFIAFVA VLHVMGKLYF VK

Arabidopsis Description

SEC61 BETAProtein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178VTT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.