Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 5
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31544 | Canola | plastid | 99.08 | 99.08 |
| Bra002478.1-P | Field mustard | plastid | 99.08 | 99.08 |
| CDY67667 | Canola | plastid | 86.24 | 86.24 |
| CDX88759 | Canola | plastid | 83.49 | 83.49 |
| KRH26396 | Soybean | endoplasmic reticulum | 69.72 | 72.38 |
| KRH38145 | Soybean | golgi, plastid, vacuole | 43.12 | 67.14 |
| VIT_13s0019g04080.t01 | Wine grape | plastid | 63.3 | 63.89 |
| KRH01163 | Soybean | plastid | 48.62 | 63.86 |
| KRH01231 | Soybean | mitochondrion | 48.62 | 63.86 |
| CDY27395 | Canola | mitochondrion, plastid | 45.87 | 62.5 |
| Solyc03g116990.1.1 | Tomato | plastid | 62.39 | 62.39 |
| CDY18954 | Canola | plastid | 47.71 | 61.9 |
| PGSC0003DMT400090964 | Potato | plastid | 60.55 | 61.68 |
| CDX74708 | Canola | plastid | 46.79 | 61.45 |
| CDX83408 | Canola | plastid | 45.87 | 60.98 |
| Solyc06g010060.1.1 | Tomato | nucleus | 62.39 | 60.71 |
| PGSC0003DMT400051074 | Potato | mitochondrion, plastid | 43.12 | 60.26 |
| CDY37026 | Canola | plastid | 44.95 | 59.04 |
Protein Annotations
| MapMan:23.3.1.3.2 | GO:A0A078CTT3 | EnsemblPlants:CDX80167 | ProteinID:CDX80167 | ProteinID:CDX80167.1 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005784 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00133087001 |
| PFAM:PF03911 | PIRSF:PIRSF006398 | PANTHER:PTHR13509 | PANTHER:PTHR13509:SF8 | InterPro:Sec61-beta/Sbh | InterPro:SecG/Sec61-beta/Sbh |
| TMHMM:TMhelix | UniParc:UPI0004EF0A9D | SEG:seg | : | : | : |
Description
BnaC09g35750D
Coordinates
chrLK031820:+:41332..41661
Molecular Weight (calculated)
10759.0 Da
IEP (calculated)
11.668
GRAVY (calculated)
-0.030
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKGSSQSQQ STSTAPSASR PGLAAPRGSA AATAGMRRRK LGGGGGASAG GGSGAGGGSN NMLRFYTDEA PGLKISPTVV LIMSLCFIGF VTALHVFGKL
101: YLHKSGSKA
101: YLHKSGSKA
001: MARGSSQSQQ STSTGSSTAR PGLAAPRGSA AATAGMRRRR LGGGGGVSSG GGSGVGSGSS NMLRFYTDDA PGLKISPTVV LIMSLCFIGF VTALHVFGKL
101: YLHKSGSQA
101: YLHKSGSQA
Arabidopsis Description
Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9FKK1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.