Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 6
- endoplasmic reticulum 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g116990.1.1 | Tomato | plastid | 94.64 | 97.25 |
| PGSC0003DMT400090964 | Potato | plastid | 91.96 | 96.26 |
| VIT_13s0019g04080.t01 | Wine grape | plastid | 65.18 | 67.59 |
| AT5G60460.1 | Thale cress | plastid | 65.18 | 66.97 |
| KRH26396 | Soybean | endoplasmic reticulum | 62.5 | 66.67 |
| Bra006659.1-P | Field mustard | plastid | 63.39 | 65.14 |
| CDX88759 | Canola | plastid | 63.39 | 65.14 |
| CDY67667 | Canola | plastid | 62.5 | 64.22 |
| KRH38145 | Soybean | golgi, plastid, vacuole | 39.29 | 62.86 |
| Bra002478.1-P | Field mustard | plastid | 60.71 | 62.39 |
| CDX80167 | Canola | plastid | 60.71 | 62.39 |
| CDY31544 | Canola | plastid | 60.71 | 62.39 |
| KRH01231 | Soybean | mitochondrion | 44.64 | 60.24 |
| KRH01163 | Soybean | plastid | 43.75 | 59.04 |
Protein Annotations
| MapMan:23.3.1.3.2 | GO:GO:0003674 | GO:GO:0005086 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005784 |
| GO:GO:0006616 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0015450 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031204 | GO:GO:0031205 | GO:GO:0065009 | UniProt:K4C433 |
| PFAM:PF03911 | PIRSF:PIRSF006398 | PANTHER:PTHR13509 | PANTHER:PTHR13509:SF8 | InterPro:Sec61-beta/Sbh | InterPro:SecG/Sec61-beta/Sbh |
| EnsemblPlantsGene:Solyc06g010060.1 | EnsemblPlants:Solyc06g010060.1.1 | TMHMM:TMhelix | UniParc:UPI00027670B3 | SEG:seg | : |
Description
Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:K4C433]
Coordinates
chr6:+:4875202..4875540
Molecular Weight (calculated)
11197.2 Da
IEP (calculated)
12.155
GRAVY (calculated)
-0.120
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGSSSQST SSSTTRPGTA APRGSAAATA GMRRRRLGAS SSTAGGGGGN PVVGSGNASN MLRFYTDDSP GLKISPTVVL VMSLCFIGFV TTLHVLGKFY
101: RYRSGSGSGS GA
101: RYRSGSGSGS GA
001: MARGSSQSQQ STSTGSSTAR PGLAAPRGSA AATAGMRRRR LGGGGGVSSG GGSGVGSGSS NMLRFYTDDA PGLKISPTVV LIMSLCFIGF VTALHVFGKL
101: YLHKSGSQA
101: YLHKSGSQA
Arabidopsis Description
Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9FKK1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.