Factsheet for HORVU3Hr1G048610.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 4
endoplasmic reticulum 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23720664

gfp PMID: 23720664 doi

WJ Zhang, S Hanisch, M Kwaaitaal, C Pedersen, H Thordal-Christensen

Section for Plant and Soil Science, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen Frederiksberg, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G208200.1	Wheat	plastid	98.8	98.8
TraesCS3A01G207800.1	Wheat	plastid	98.8	98.8
TraesCS3B01G234900.1	Wheat	plastid	96.39	95.24
TraesCS5D01G021100.1	Wheat	plastid	87.95	93.59
EES00928	Sorghum	plastid	90.36	92.59
Zm00001d044231_P001	Maize	plastid	89.16	91.36
Os01t0565900-01	Rice	plastid	86.75	90.0
TraesCS5B01G013400.1	Wheat	plastid	84.34	88.61
TraesCS5A01G015200.1	Wheat	plastid	84.34	88.61
Zm00001d044237_P001	Maize	plastid	85.54	87.65
Zm00001d011185_P001	Maize	plastid	85.54	87.65
Os12t0173366-01	Rice	plastid	79.52	79.52
KRH65413	Soybean	endoplasmic reticulum	63.86	64.63
KRH76131	Soybean	plastid	63.86	64.63
AT2G45070.3	Thale cress	plastid	62.65	63.41
CDY27395	Canola	mitochondrion, plastid	60.24	62.5
CDX83408	Canola	plastid	60.24	60.98
Bra000368.1-P	Field mustard	plastid	60.24	60.98
AT3G60540.2	Thale cress	plastid	59.04	60.49
CDX74708	Canola	plastid	60.24	60.24
Bra004887.1-P	Field mustard	plastid	60.24	60.24
CDY37026	Canola	plastid	57.83	57.83
Bra040326.1-P	Field mustard	plastid	57.83	57.83
PGSC0003DMT400018011	Potato	mitochondrion	57.83	57.14
VIT_05s0094g00210.t01	Wine grape	mitochondrion	45.78	56.72
CDY18954	Canola	plastid	56.63	55.95
VIT_15s0021g02620.t01	Wine grape	plastid	65.06	48.21
HORVU5Hr1G048380.2	Barley	endoplasmic reticulum, golgi, plastid	40.96	47.89
GSMUA_Achr7P24220_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	78.31	46.43
HORVU4Hr1G025090.1	Barley	plastid	48.19	36.04
VIT_15s0021g02490.t01	Wine grape	cytosol	66.27	35.03
VIT_05s0094g00170.t01	Wine grape	cytosol	57.83	27.43

Protein Annotations

MapMan:23.3.1.3.2	EMBL:AK373353	UniProt:F2EB28	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005784	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:HORVU3Hr1G048610	EnsemblPlants:HORVU3Hr1G048610.1	PFAM:PF03911
PIRSF:PIRSF006398	PANTHER:PTHR13509	PANTHER:PTHR13509:SF2	InterPro:Sec61-beta/Sbh	InterPro:SecG/Sec61-beta/Sbh	TMHMM:TMhelix
UniParc:UPI00020083F6	SEG:seg	:	:	:	:

Description

Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:F2EB28]

Coordinates

chrchr3H:-:336344421..336346891

Molecular Weight (calculated)

8368.1 Da

IEP (calculated)

11.821

GRAVY (calculated)

0.255

Length

83 amino acids

Sequence
(BLAST)

1: MVANGDAPAR GSAAAAASLR RRRTTSGAAA AGGGAGASTM LQFYTDEAAG RKMSPNAVLI MSIGFIAVVA VLHVFGKLYR TPN

Best Arabidopsis Sequence Match ( AT3G60540.2 )
(BLAST)

1: MVGGGAPQRG SAAATASMRR RKPAGGSSSA GGGAGTMLQF YTDDAPGLKI SPNVVLIMSI GFIAFVAVLH VMGKLYFVKS K

Arabidopsis Description

Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9M206]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.