Factsheet for VIT_15s0021g02620.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
endoplasmic reticulum 2
mitochondrion 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76131	Soybean	plastid	60.71	82.93
KRH65413	Soybean	endoplasmic reticulum	60.71	82.93
CDY27395	Canola	mitochondrion, plastid	56.25	78.75
Bra000368.1-P	Field mustard	plastid	56.25	76.83
CDX83408	Canola	plastid	56.25	76.83
PGSC0003DMT400018011	Potato	mitochondrion	57.14	76.19
Bra004887.1-P	Field mustard	plastid	55.36	74.7
CDX74708	Canola	plastid	55.36	74.7
AT2G45070.3	Thale cress	plastid	53.57	73.17
VIT_05s0094g00210.t01	Wine grape	mitochondrion	43.75	73.13
CDY18954	Canola	plastid	53.57	71.43
Os01t0565900-01	Rice	plastid	50.0	70.0
CDY37026	Canola	plastid	51.79	69.88
Bra040326.1-P	Field mustard	plastid	51.79	69.88
TraesCS5B01G013400.1	Wheat	plastid	49.11	69.62
TraesCS5A01G015200.1	Wheat	plastid	49.11	69.62
AT3G60540.2	Thale cress	plastid	50.0	69.14
Zm00001d011185_P001	Maize	plastid	49.11	67.9
TraesCS5D01G021100.1	Wheat	plastid	46.43	66.67
EES00928	Sorghum	plastid	48.21	66.67
Zm00001d044231_P001	Maize	plastid	48.21	66.67
HORVU3Hr1G048610.1	Barley	endoplasmic reticulum	48.21	65.06
TraesCS3A01G207800.1	Wheat	plastid	48.21	65.06
TraesCS3D01G208200.1	Wheat	plastid	48.21	65.06
TraesCS3B01G234900.1	Wheat	plastid	48.21	64.29
Zm00001d044237_P001	Maize	plastid	45.54	62.96
GSMUA_Achr9P04740_001	Banana	plastid	43.75	60.49
Os12t0173366-01	Rice	plastid	44.64	60.24
VIT_15s0021g02490.t01	Wine grape	cytosol	75.89	54.14
VIT_13s0019g04080.t01	Wine grape	plastid	43.75	45.37
VIT_05s0094g00170.t01	Wine grape	cytosol	60.71	38.86
GSMUA_Achr7P24220_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	48.21	38.57

Protein Annotations

EntrezGene:100258179	wikigene:100258179	MapMan:23.3.1.3.2	ProteinID:CBI16595	ProteinID:CBI16595.3	UniProt:D7SLR7
EMBL:FN594952	GO:GO:0003674	GO:GO:0005086	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005784
GO:GO:0006616	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015450	GO:GO:0016020
GO:GO:0016021	GO:GO:0031204	GO:GO:0031205	GO:GO:0065009	EntrezGene:LOC100258179	wikigene:LOC100258179
PFAM:PF03911	PANTHER:PTHR13509	PANTHER:PTHR13509:SF2	InterPro:Sec61-beta/Sbh	InterPro:SecG/Sec61-beta/Sbh	TIGR:TC64703
TMHMM:TMhelix	UniParc:UPI0001BE0E95	ArrayExpress:VIT_15s0021g02620	EnsemblPlantsGene:VIT_15s0021g02620	EnsemblPlants:VIT_15s0021g02620.t01	RefSeq:XP_002278236
RefSeq:XP_002278236.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr15:-:13601040..13603801

Molecular Weight (calculated)

11892.5 Da

IEP (calculated)

11.058

GRAVY (calculated)

-0.051

Length

112 amino acids

Sequence
(BLAST)

001: MYPTKKNRTH YSKSKTQDDS ASIAILSASK MVQNGAAPPR GSAAAAASLR RRRTTSGGTA GVASGNMLQF YTDDAPGLKI SPNVVLVMSI GFIAFVAILH
101: VMGKLYFVRK EA

Best Arabidopsis Sequence Match ( AT2G45070.1 )
(BLAST)

1: MVGSGAPQRG SAAATASMRR RKPTSGAGGG GASGGAAGSM LQFYTDDAPG LKISPNVVLI MSIGFIAFVA VLHVMGKLYF VK

Arabidopsis Description

SEC61 BETAProtein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178VTT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.