Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- endoplasmic reticulum 2
- mitochondrion 3
- vacuole 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
21433289
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
OQU77247 | Sorghum | plastid | 58.82 | 84.51 |
GSMUA_AchrUn_... | Banana | endoplasmic reticulum, plasma membrane | 36.27 | 78.72 |
HORVU5Hr1G048380.2 | Barley | endoplasmic reticulum, golgi, plastid | 50.98 | 73.24 |
Os11t0104050-01 | Rice | plasma membrane | 68.63 | 65.42 |
Zm00001d011050_P001 | Maize | plastid | 61.76 | 58.88 |
TraesCS4A01G183100.1 | Wheat | plastid | 63.73 | 58.56 |
TraesCS4B01G135500.1 | Wheat | plastid | 63.73 | 58.56 |
TraesCS4D01G130200.1 | Wheat | golgi | 63.73 | 58.56 |
HORVU4Hr1G025090.1 | Barley | plastid | 62.75 | 57.66 |
Zm00001d035610_P001 | Maize | plastid | 59.8 | 56.48 |
TraesCS5A01G155200.1 | Wheat | plastid | 56.86 | 52.25 |
TraesCS5B01G153400.1 | Wheat | plastid | 56.86 | 51.79 |
TraesCS5D01G160200.1 | Wheat | plastid | 56.86 | 51.79 |
Os01t0565900-01 | Rice | plastid | 38.24 | 48.75 |
Os12t0173366-01 | Rice | plastid | 36.27 | 44.58 |
Protein Annotations
MapMan:23.3.1.3.2 | EntrezGene:9271333 | ProteinID:ABA91053.1 | EMBL:AK243463 | ProteinID:BAH95026.1 | ProteinID:BAH95473.1 |
ProteinID:BAT12289.1 | ProteinID:BAT15466.1 | UniProt:C7JAB6 | GO:GO:0003674 | GO:GO:0005086 | GO:GO:0005215 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
GO:GO:0005783 | GO:GO:0005784 | GO:GO:0006616 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
GO:GO:0015031 | GO:GO:0015450 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031204 | GO:GO:0031205 |
EnsemblPlantsGene:Os12g0103300 | EnsemblPlants:Os12t0103300-01 | PFAM:PF03911 | PANTHER:PTHR13509 | PANTHER:PTHR13509:SF8 | InterPro:Sec61-beta/Sbh |
InterPro:SecG/Sec61-beta/Sbh | TMHMM:TMhelix | UniParc:UPI0001B65D43 | RefSeq:XP_015615361.1 | SEG:seg | : |
Description
Preprotein translocase Sec, Sec61-beta subunit domain containing protein. (Os12t0103300-01)
Coordinates
chr12:-:156368..157069
Molecular Weight (calculated)
10963.4 Da
IEP (calculated)
12.303
GRAVY (calculated)
-0.039
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: VDYSSSRLPV FHPNRHGSLL LPVPVLRRRR RRGRPPSTAG GSGGFSGGGG SNMLRFYTDE APGLRLSPTM VLVMSLCFIG FVTALHVFGK LYRSRTAASA
101: SA
101: SA
001: MARGSSQSQQ STSTGSSTAR PGLAAPRGSA AATAGMRRRR LGGGGGVSSG GGSGVGSGSS NMLRFYTDDA PGLKISPTVV LIMSLCFIGF VTALHVFGKL
101: YLHKSGSQA
101: YLHKSGSQA
Arabidopsis Description
Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9FKK1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.