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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 2
  • endoplasmic reticulum 2
  • mitochondrion 3
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:endoplasmic reticulum, mitochondrion, plastid, vacuole
BaCelLo:plastid
EpiLoc:endoplasmic reticulum
iPSORT:mitochondrion
MultiLoc:vacuole
Plant-mPloc:endoplasmic reticulum
PProwler:mitochondrion
TargetP:mitochondrion
YLoc:plastid
plastid: 21433289
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU77247 Sorghum plastid 58.82 84.51
GSMUA_AchrUn_... Banana endoplasmic reticulum, plasma membrane 36.27 78.72
HORVU5Hr1G048380.2 Barley endoplasmic reticulum, golgi, plastid 50.98 73.24
Os11t0104050-01 Rice plasma membrane 68.63 65.42
Zm00001d011050_P001 Maize plastid 61.76 58.88
TraesCS4A01G183100.1 Wheat plastid 63.73 58.56
TraesCS4B01G135500.1 Wheat plastid 63.73 58.56
TraesCS4D01G130200.1 Wheat golgi 63.73 58.56
HORVU4Hr1G025090.1 Barley plastid 62.75 57.66
Zm00001d035610_P001 Maize plastid 59.8 56.48
TraesCS5A01G155200.1 Wheat plastid 56.86 52.25
TraesCS5B01G153400.1 Wheat plastid 56.86 51.79
TraesCS5D01G160200.1 Wheat plastid 56.86 51.79
Os01t0565900-01 Rice plastid 38.24 48.75
Os12t0173366-01 Rice plastid 36.27 44.58
Protein Annotations
MapMan:23.3.1.3.2EntrezGene:9271333ProteinID:ABA91053.1EMBL:AK243463ProteinID:BAH95026.1ProteinID:BAH95473.1
ProteinID:BAT12289.1ProteinID:BAT15466.1UniProt:C7JAB6GO:GO:0003674GO:GO:0005086GO:GO:0005215
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005784GO:GO:0006616GO:GO:0006810GO:GO:0006886GO:GO:0008150
GO:GO:0015031GO:GO:0015450GO:GO:0016020GO:GO:0016021GO:GO:0031204GO:GO:0031205
EnsemblPlantsGene:Os12g0103300EnsemblPlants:Os12t0103300-01PFAM:PF03911PANTHER:PTHR13509PANTHER:PTHR13509:SF8InterPro:Sec61-beta/Sbh
InterPro:SecG/Sec61-beta/SbhTMHMM:TMhelixUniParc:UPI0001B65D43RefSeq:XP_015615361.1SEG:seg:
Description
Preprotein translocase Sec, Sec61-beta subunit domain containing protein. (Os12t0103300-01)
Coordinates
chr12:-:156368..157069
Molecular Weight (calculated)
10963.4 Da
IEP (calculated)
12.303
GRAVY (calculated)
-0.039
Length
102 amino acids
Sequence
(BLAST)
001: VDYSSSRLPV FHPNRHGSLL LPVPVLRRRR RRGRPPSTAG GSGGFSGGGG SNMLRFYTDE APGLRLSPTM VLVMSLCFIG FVTALHVFGK LYRSRTAASA
101: SA
Best Arabidopsis Sequence Match ( AT5G60460.1 )
(BLAST)
001: MARGSSQSQQ STSTGSSTAR PGLAAPRGSA AATAGMRRRR LGGGGGVSSG GGSGVGSGSS NMLRFYTDDA PGLKISPTVV LIMSLCFIGF VTALHVFGKL
101: YLHKSGSQA
Arabidopsis Description
Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9FKK1]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.