Factsheet for TraesCS5D01G160200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G153400.1	Wheat	plastid	99.11	99.11
TraesCS5A01G155200.1	Wheat	plastid	98.21	99.1
TraesCS4D01G130200.1	Wheat	golgi	83.93	84.68
Os11t0104050-01	Rice	plasma membrane	76.79	80.37
HORVU5Hr1G048380.2	Barley	endoplasmic reticulum, golgi, plastid	50.89	80.28
OQU77247	Sorghum	plastid	50.0	78.87
Zm00001d011050_P001	Maize	plastid	74.11	77.57
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, plasma membrane	32.14	76.6
Zm00001d035610_P001	Maize	plastid	66.96	69.44
Os12t0103300-01	Rice	plastid	51.79	56.86
TraesCS5D01G021100.1	Wheat	plastid	34.82	50.0
TraesCS3D01G208200.1	Wheat	plastid	35.71	48.19

Protein Annotations

EnsemblPlants:TraesCS5D01G160200.1	EnsemblPlantsGene:TraesCS5D01G160200	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005784	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020
InterPro:Sec61-beta/Sbh	InterPro:SecG/Sec61-beta/Sbh	PANTHER:PTHR13509	PANTHER:PTHR13509:SF8	PFAM:PF03911	PIRSF:PIRSF006398
SEG:seg	TMHMM:TMhelix	MapMan:23.3.1.3.2	:	:	:

Description

No Description!

Coordinates

chr5D:+:249980964..249981668

Molecular Weight (calculated)

11176.3 Da

IEP (calculated)

12.426

GRAVY (calculated)

-0.042

Length

112 amino acids

Sequence
(BLAST)

001: MARTSSQSQS SVAGAAGASR PATVGPRGTA AATAGMRRRP GRTSSSSGAG GGGGFSGGGN NMLRFYTDEA PGLRLSPTMV LVMSVCFIGF VTALHVFGKL
101: YRSRTAASNA SA

Best Arabidopsis Sequence Match ( AT5G60460.1 )
(BLAST)

001: MARGSSQSQQ STSTGSSTAR PGLAAPRGSA AATAGMRRRR LGGGGGVSSG GGSGVGSGSS NMLRFYTDDA PGLKISPTVV LIMSLCFIGF VTALHVFGKL
101: YLHKSGSQA

Arabidopsis Description

Protein transport protein Sec61 subunit beta [Source:UniProtKB/TrEMBL;Acc:Q9FKK1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.