CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30450	Canola	plastid	92.8	94.71
CDX83447	Canola	plastid	89.91	89.66
CDX95582	Canola	plastid	89.63	89.37
AT2G44040.1	Thale cress	plastid	87.9	87.9
KRH06536	Soybean	cytosol	46.11	83.77
Solyc01g098380.2.1	Tomato	plastid	64.27	67.17
PGSC0003DMT400073601	Potato	plastid	63.4	66.27
GSMUA_Achr4P25630_001	Banana	mitochondrion	54.18	63.51
KRH47978	Soybean	mitochondrion	62.54	63.08
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	63.4	63.04
GSMUA_Achr1P02550_001	Banana	plastid	59.08	61.93
Os03t0245100-01	Rice	mitochondrion	53.03	56.62
EER95181	Sorghum	mitochondrion	52.74	56.13
TraesCS4D01G226800.1	Wheat	mitochondrion	52.45	55.83
OQU80721	Sorghum	plastid	55.04	55.69
Os02t0436400-01	Rice	plastid	54.47	55.1
Zm00001d049956_P002	Maize	plastid	54.47	55.1
TraesCS4A01G069000.2	Wheat	mitochondrion	51.87	55.05
TraesCS4B01G226100.1	Wheat	mitochondrion	51.59	54.91
TraesCS1A01G102500.1	Wheat	plastid	53.31	54.25
TraesCS1D01G094400.1	Wheat	plastid	53.03	53.96
Zm00001d047935_P003	Maize	plasma membrane	51.01	53.8
HORVU4Hr1G063600.3	Barley	mitochondrion	50.14	51.03
HORVU1Hr1G021120.1	Barley	mitochondrion, plastid	53.89	46.29
KRH06535	Soybean	mitochondrion, plastid	17.87	40.79
TraesCS1B01G113300.2	Wheat	plastid	39.48	37.74
HORVU4Hr1G073970.1	Barley	cytosol	7.2	31.65

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.3.2	GO:A0A078GE90
UniProt:A0A078GE90	EnsemblPlants:CDY23412	ProteinID:CDY23412	ProteinID:CDY23412.1	InterPro:DHDPR_bac	InterPro:DapB_C
InterPro:DapB_N	InterPro:Dihydrodipicolinate_Rdtase_pln	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0008839	GO:GO:0009058	GO:GO:0009089	GO:GO:0009987
GO:GO:0055114	GO:GO:0070402	EnsemblPlantsGene:GSBRNA2T00022021001	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01113	PFAM:PF05173
PANTHER:PTHR20836	PANTHER:PTHR20836:SF4	MetaCyc:PWY-2941	MetaCyc:PWY-2942	MetaCyc:PWY-5097	SUPFAM:SSF51735
TIGRFAMs:TIGR02130	UniPathway:UPA00034	UniParc:UPI0004EE454D	:	:	:

Description

BnaC04g49400DBnaC04g49400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GE90]

Coordinates

chrLK032143:-:331468..333411

Molecular Weight (calculated)

37659.4 Da

IEP (calculated)

6.316

GRAVY (calculated)

-0.011

Length

347 amino acids

Sequence
(BLAST)

001: MATTNWLVSS PTPSVFLHPS VNPRLAFASI KNQTLVKTRV SFLGNAKRRL PAVLSMTATE EGAVKSVLPG NGISIMVNGC TGKMGKAVIK AADTAGVNIV
101: PTSFGSASEA GQTVEVCGKE ITVHGPTERE EVLSSVFQKH PELIVVDYTI PTAVNDNAEL YSRVGVPFVM GTTGGDREKL YESVEKAKIY AVISPQMGKQ
201: VVAFLAAMEI MAEQFPGAFS GYSLEVMESH QASKLDASGT AKAVISCFQE LGVSYDMDQI QLIRDPKQQV EMVGVPEEHV SGHAFYLYHL TSPDETVSFE
301: FQHNVCGRSI YAEGTVDAVL FLAKKIRLKA DQRIYNMIDV LREGNMR

Best Arabidopsis Sequence Match ( AT2G44040.1 )
(BLAST)

001: MATNGLMASS SVFLHRPRIA FASRTNQTVG KYGKGRVSFM GIGTRRLPVV LSMTAMADSG EEAVKSVLPG NGISIMVNGC SGKMGKAVIK AADSAGVNIV
101: PISFGSAGED GQRVEVCGKE ITVHGPTERE KVLSSVFEKH PELIVVDYTI PSAVNDNAEL YSKVGVPFVM GTTGGDRNKL YETVEEAKIY AVISPQMGKQ
201: VVAFLAAMEI MAEQFPGAFS GYSLDVMESH QASKLDASGT AKAVISCFQE LGVSYDMDQI QLIRDPKQQV EMVGVPEEHI SGHAFHLYHL TSPDETVSFE
301: FQHNVCGRSI YAEGTVDAVL FLAKKIRLKA DQRIYNMIDV LREGNMR

Arabidopsis Description

DAPB14-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80574]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.