Factsheet for TraesCS1B01G113300.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G542700.1
TraesCS2B01G572500.1
TraesCS2D01G543900.1
TraesCS6A01G131200.1
TraesCS6A01G171900.1
TraesCS6B01G159600.1
TraesCS6B01G199800.1
TraesCS6D01G121100.1
TraesCS6D01G161300.1
TraesCS7A01G436400.1
TraesCS7B01G335700.1
TraesCS7D01G426700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44040.1	TraesCS2A01G542700.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS2B01G572500.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS2D01G543900.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6A01G131200.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6A01G171900.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6B01G159600.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6B01G199800.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6D01G121100.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6D01G161300.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS7A01G436400.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS7B01G335700.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS7D01G426700.1	AT3G20310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G094400.1	Wheat	plastid	69.42	73.9
TraesCS1A01G102500.1	Wheat	plastid	69.42	73.9
HORVU4Hr1G073970.1	Barley	cytosol	15.98	73.42
Os02t0436400-01	Rice	plastid	60.06	63.56
OQU80721	Sorghum	plastid	57.58	60.93
Zm00001d049956_P002	Maize	plastid	56.75	60.06
KRH06536	Soybean	cytosol	27.27	51.83
GSMUA_Achr1P02550_001	Banana	plastid	45.45	49.85
GSMUA_Achr4P25630_001	Banana	mitochondrion	39.67	48.65
TraesCS4B01G226100.1	Wheat	mitochondrion	41.87	46.63
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	44.63	46.42
KRH47978	Soybean	mitochondrion	41.32	43.6
PGSC0003DMT400073601	Potato	plastid	38.57	42.17
Solyc01g098380.2.1	Tomato	plastid	37.74	41.27
AT3G59890.1	Thale cress	plastid	39.39	40.97
CDY30450	Canola	plastid	38.29	40.88
Bra037671.1-P	Field mustard	plastid	38.02	40.59
CDX95582	Canola	plastid	38.57	40.23
CDX83447	Canola	plastid	38.57	40.23
Bra000338.1-P	Field mustard	plastid	38.57	40.23
AT2G44040.1	Thale cress	plastid	38.29	40.06
CDY23412	Canola	plastid	37.74	39.48
KRH06535	Soybean	mitochondrion, plastid	13.77	32.89

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	Gene3D:3.40.50.720	MapMan:4.1.2.2.3.2	InterPro:DHDPR_bac	InterPro:DapB_C
InterPro:DapB_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0008839
GO:GO:0009058	GO:GO:0009089	GO:GO:0009987	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01113
PFAM:PF05173	PANTHER:PTHR20836	PANTHER:PTHR20836:SF3	SUPFAM:SSF51735	EnsemblPlantsGene:TraesCS1B01G113300	EnsemblPlants:TraesCS1B01G113300.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:132057653..132064284

Molecular Weight (calculated)

40022.5 Da

IEP (calculated)

9.242

GRAVY (calculated)

-0.175

Length

363 amino acids

Sequence
(BLAST)

001: MLSAAFAVHP AAVASQRHSV RQHQQFCAPI RTATPRRRLP VAMLSVTNAV ATQSRESSPA APRKLSFPIL VNSCTGKMGK SVAEAAVSAG LQLVPVSFSA
101: IEVPDGKLNI CDRDIHIHDP SESERILRSI AKDYPDMVVV DYTVPDAVNA NAELYCKLGL PFVMGTTGGN RQLLNKTVQD ANVYAVISPQ MGKQVVAFLA
201: AMEIMAEKFP GAFAGYKLEV MESHQATKLD VSGTAKAVIS CFQKLGVSFD LDEQRGVPAL MDPRRRATSD DPVWKYGFWP DLERKDLLLC TLCGKIVHAG
301: VRRLKQHLSG GCSDADMCPK ASTEIRIEMR KSLNTRKFKA MERYIDEKDE AEVQRRLSVI YRR

Best Arabidopsis Sequence Match ( AT2G44040.1 )
(BLAST)

001: MATNGLMASS SVFLHRPRIA FASRTNQTVG KYGKGRVSFM GIGTRRLPVV LSMTAMADSG EEAVKSVLPG NGISIMVNGC SGKMGKAVIK AADSAGVNIV
101: PISFGSAGED GQRVEVCGKE ITVHGPTERE KVLSSVFEKH PELIVVDYTI PSAVNDNAEL YSKVGVPFVM GTTGGDRNKL YETVEEAKIY AVISPQMGKQ
201: VVAFLAAMEI MAEQFPGAFS GYSLDVMESH QASKLDASGT AKAVISCFQE LGVSYDMDQI QLIRDPKQQV EMVGVPEEHI SGHAFHLYHL TSPDETVSFE
301: FQHNVCGRSI YAEGTVDAVL FLAKKIRLKA DQRIYNMIDV LREGNMR

Arabidopsis Description

DAPB14-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80574]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.