CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88863
EES06418
OQU82539

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44040.1	EER88863	AT3G20310.1	21798944
AT2G44040.1	EES06418	AT3G20310.1	21798944
AT2G44040.1	OQU82539	AT3G20310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049956_P002	Maize	plastid	92.71	92.71
Os02t0436400-01	Rice	plastid	83.38	83.38
TraesCS1D01G094400.1	Wheat	plastid	81.92	82.4
TraesCS1A01G102500.1	Wheat	plastid	80.76	81.23
KRH06536	Soybean	cytosol	44.31	79.58
HORVU1Hr1G021120.1	Barley	mitochondrion, plastid	79.59	67.57
GSMUA_Achr4P25630_001	Banana	mitochondrion	58.02	67.23
GSMUA_Achr1P02550_001	Banana	plastid	64.43	66.77
HORVU4Hr1G073970.1	Barley	cytosol	14.58	63.29
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	62.97	61.89
EER95181	Sorghum	mitochondrion	58.6	61.66
PGSC0003DMT400073601	Potato	plastid	57.14	59.04
KRH47978	Soybean	mitochondrion	58.89	58.72
Solyc01g098380.2.1	Tomato	plastid	55.98	57.83
TraesCS1B01G113300.2	Wheat	plastid	60.93	57.58
CDY30450	Canola	plastid	55.98	56.47
Bra037671.1-P	Field mustard	plastid	55.69	56.18
AT3G59890.1	Thale cress	plastid	57.14	56.16
AT2G44040.1	Thale cress	plastid	55.98	55.33
CDX83447	Canola	plastid	55.98	55.17
Bra000338.1-P	Field mustard	plastid	55.98	55.17
CDY23412	Canola	plastid	55.69	55.04
CDX95582	Canola	plastid	55.69	54.89
KRH06535	Soybean	mitochondrion, plastid	14.29	32.24

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.3.2	UniProt:A0A1Z5RB94
InterPro:DHDPR_bac	InterPro:DapB_C	InterPro:DapB_N	InterPro:Dihydrodipicolinate_Rdtase_pln	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008839	GO:GO:0009058
GO:GO:0009089	GO:GO:0009987	GO:GO:0055114	GO:GO:0070402	InterPro:NAD(P)-bd_dom_sf	EnsemblPlants:OQU80721
ProteinID:OQU80721	ProteinID:OQU80721.1	PFAM:PF01113	PFAM:PF05173	PANTHER:PTHR20836	PANTHER:PTHR20836:SF3
EnsemblPlantsGene:SORBI_3007G171200	SUPFAM:SSF51735	TIGRFAMs:TIGR02130	UniParc:UPI0003C70884	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:60663185..60668560

Molecular Weight (calculated)

37173.1 Da

IEP (calculated)

6.782

GRAVY (calculated)

0.034

Length

343 amino acids

Sequence
(BLAST)

001: MLSATIPAHP AAATPLRRRY RLRPRQPLCA PIGTAATRQW MATTRLSVTN ALANLSVESA PAAPPKLSFP ILVNSCTGKM GKAVAEAAVS AGLQLVPVSF
101: SAMEVPDGKI EVCDREICIH DPSESEKILP SIVKEYPDLI VVDYTVPDAV NANAELYCKL GLPFVMGTTG GNRQLLHKTV LDANIYAVIS PQMGKQVVAF
201: LAAMEIMSEQ FPGAFSGYKL EVMESHQATK LDISGTAKAV ISCFQKLGVS FDMNEVKQVR DPEEQVALVG VPEEHLGGHA FHMYHLTSPD GTVSFEFQHN
301: VCGRSIYAEG TVDAAMFLYT KIKSGASKKL YDMIDVLREG NMR

Best Arabidopsis Sequence Match ( AT3G59890.2 )
(BLAST)

001: MAASSVFLHR PVHPHFSFSS RTNQMVPLGF KGRVSFIGNV KRCFPVVLSM GKSETFEEAG NSVAPGNGIS IMVNGCSGKM GKAVIKAADS AGVNIVPTSF
101: GSVEEAGQTV EVCGKEILVH GPTEREKVLS SVFEKYPELI VVDYTIPSAV NDNAELYGKV GVPFVMGTTG GDRTRLYKTV EESKIYAVIS PQMGKQVVAF
201: LAAMEIMSEQ FPGAFAGYSL EVMESHQASK LDASGTAKAV ISCFQKLGVS YDMDQIQLIR DPKQQIEVVG VPEEHVSGHA FHLYHLTSPD KTVSFEFQHN
301: VCGRSIYAEG TVDAVLFLAK KIRSKAEKRI YNMIDVLREG NMR

Arabidopsis Description

DAPB24-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LB01]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.