Factsheet for VIT_05s0094g01480.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0090g01080.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44040.1	VIT_19s0090g01080.t01	AT3G20310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06536	Soybean	cytosol	45.56	83.25
PGSC0003DMT400073601	Potato	plastid	65.33	68.67
KRH47978	Soybean	mitochondrion	67.34	68.31
Solyc01g098380.2.1	Tomato	plastid	64.76	68.07
GSMUA_Achr4P25630_001	Banana	mitochondrion	57.59	67.91
GSMUA_Achr1P02550_001	Banana	plastid	63.04	66.47
CDY30450	Canola	plastid	62.46	64.12
AT3G59890.1	Thale cress	plastid	63.9	63.9
Os02t0436400-01	Rice	plastid	62.75	63.85
Bra037671.1-P	Field mustard	plastid	62.18	63.82
AT2G44040.1	Thale cress	plastid	63.32	63.69
CDY23412	Canola	plastid	63.04	63.4
CDX95582	Canola	plastid	63.04	63.22
Bra000338.1-P	Field mustard	plastid	63.04	63.22
CDX83447	Canola	plastid	63.04	63.22
OQU80721	Sorghum	plastid	61.89	62.97
Zm00001d049956_P002	Maize	plastid	61.32	62.39
TraesCS4D01G226800.1	Wheat	mitochondrion	57.02	61.04
TraesCS1A01G102500.1	Wheat	plastid	59.6	61.0
TraesCS1D01G094400.1	Wheat	plastid	59.6	61.0
EER95181	Sorghum	mitochondrion	56.73	60.74
TraesCS4A01G069000.2	Wheat	mitochondrion	56.73	60.55
Os03t0245100-01	Rice	mitochondrion	55.87	60.0
TraesCS4B01G226100.1	Wheat	mitochondrion	55.87	59.82
Zm00001d047935_P003	Maize	plasma membrane	54.73	58.05
HORVU4Hr1G063600.3	Barley	mitochondrion	54.15	55.43
HORVU1Hr1G021120.1	Barley	mitochondrion, plastid	59.31	51.24
KRH06535	Soybean	mitochondrion, plastid	22.06	50.66
TraesCS1B01G113300.2	Wheat	plastid	46.42	44.63
HORVU4Hr1G073970.1	Barley	cytosol	9.17	40.51

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	EntrezGene:100268085	wikigene:100268085	Gene3D:3.30.360.10	Gene3D:3.40.50.720
MapMan:4.1.2.2.3.2	ProteinID:CCB49428	ProteinID:CCB49428.1	InterPro:DHDPR_bac	InterPro:DapB_C	InterPro:DapB_N
InterPro:Dihydrodipicolinate_Rdtase_pln	UniProt:F6HB41	EMBL:FN595507	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0008839	GO:GO:0009058	GO:GO:0009089	GO:GO:0009536	GO:GO:0009570
GO:GO:0009987	GO:GO:0019877	GO:GO:0055114	GO:GO:0070402	EntrezGene:LOC100268085	wikigene:LOC100268085
InterPro:NAD(P)-bd_dom_sf	PFAM:PF01113	PFAM:PF05173	PANTHER:PTHR20836	PANTHER:PTHR20836:SF4	SUPFAM:SSF51735
TIGR:TC53903	TIGRFAMs:TIGR02130	UniParc:UPI0001983502	ArrayExpress:VIT_05s0094g01480	EnsemblPlantsGene:VIT_05s0094g01480	EnsemblPlants:VIT_05s0094g01480.t01
unigene:Vvi.8623	RefSeq:XP_002280402	RefSeq:XP_002280402.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:24763502..24776526

Molecular Weight (calculated)

38125.0 Da

IEP (calculated)

8.357

GRAVY (calculated)

-0.104

Length

349 amino acids

Sequence
(BLAST)

001: MALFLRVPAN TFQRDNVALL SGGRRQNSTA LFSGGRRRSS AVFGRRRSAI RILSMSTPPI QHLEKPSAGS QNLGLPIMVN GCTGKMGKAV IQAAVSAGLH
101: LVPVSFSCAE ESGQTVEVCG KEIKLHGPSG RENILASVVD EYPNLIVVDY TVPDAVNDNA ELYCKVGVPF VMGTTGGDRE RLYKTVKDSN VYAVISPQMG
201: KQVVAFLAAM EIMAEQFPGA FSGYSLQVME SHQASKLDTS GTAKAVISCF QKLGVPFKLD QIQQIRDPKQ QVEMVGVPEE YLNGHAFHMY HLTSPDQTVS
301: FEFQHNVCGR SIYAEGTIDA TIFLAKKIQL GTEQRIYNMI DVLREGNMR

Best Arabidopsis Sequence Match ( AT2G44040.1 )
(BLAST)

001: MATNGLMASS SVFLHRPRIA FASRTNQTVG KYGKGRVSFM GIGTRRLPVV LSMTAMADSG EEAVKSVLPG NGISIMVNGC SGKMGKAVIK AADSAGVNIV
101: PISFGSAGED GQRVEVCGKE ITVHGPTERE KVLSSVFEKH PELIVVDYTI PSAVNDNAEL YSKVGVPFVM GTTGGDRNKL YETVEEAKIY AVISPQMGKQ
201: VVAFLAAMEI MAEQFPGAFS GYSLDVMESH QASKLDASGT AKAVISCFQE LGVSYDMDQI QLIRDPKQQV EMVGVPEEHI SGHAFHLYHL TSPDETVSFE
301: FQHNVCGRSI YAEGTVDAVL FLAKKIRLKA DQRIYNMIDV LREGNMR

Arabidopsis Description

DAPB14-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80574]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.