Factsheet for Zm00001d047935_P003

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001907_P001
Zm00001d014565_P001
Zm00001d015639_P001
Zm00001d026563_P001
Zm00001d036536_P001
Zm00001d053707_P001
Zm00001d053859_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44040.1	Zm00001d001907_P001	AT3G20310.1	21798944
AT2G44040.1	Zm00001d014565_P001	AT3G20310.1	21798944
AT2G44040.1	Zm00001d015639_P001	AT3G20310.1	21798944
AT2G44040.1	Zm00001d026563_P001	AT3G20310.1	21798944
AT2G44040.1	Zm00001d036536_P001	AT3G20310.1	21798944
AT2G44040.1	Zm00001d053707_P001	AT3G20310.1	21798944
AT2G44040.1	Zm00001d053859_P001	AT3G20310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95181	Sorghum	mitochondrion	91.49	92.33
TraesCS4D01G226800.1	Wheat	mitochondrion	77.2	77.91
Os03t0245100-01	Rice	mitochondrion	76.6	77.54
TraesCS4B01G226100.1	Wheat	mitochondrion	76.29	76.99
TraesCS4A01G069000.2	Wheat	mitochondrion	75.99	76.45
KRH06536	Soybean	cytosol	43.47	74.87
HORVU4Hr1G063600.3	Barley	mitochondrion	74.16	71.55
GSMUA_Achr4P25630_001	Banana	mitochondrion	59.27	65.88
GSMUA_Achr1P02550_001	Banana	plastid	62.61	62.24
Zm00001d049956_P002	Maize	plastid	58.66	56.27
KRH47978	Soybean	mitochondrion	57.45	54.94
PGSC0003DMT400073601	Potato	plastid	55.32	54.82
Solyc01g098380.2.1	Tomato	plastid	55.32	54.82
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	58.05	54.73
AT3G59890.1	Thale cress	plastid	54.41	51.29
CDY23412	Canola	plastid	53.8	51.01
CDY30450	Canola	plastid	52.58	50.88
Bra037671.1-P	Field mustard	plastid	52.28	50.59
CDX95582	Canola	plastid	53.5	50.57
CDX83447	Canola	plastid	53.5	50.57
AT2G44040.1	Thale cress	plastid	53.19	50.43
Bra000338.1-P	Field mustard	plastid	53.19	50.29
KRH06535	Soybean	mitochondrion, plastid	13.68	29.61

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	EntrezGene:100272879	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.3.2
ProteinID:AQL08101.1	InterPro:DHDPR_bac	InterPro:DapB_C	InterPro:DapB_N	InterPro:Dihydrodipicolinate_Rdtase_pln	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008839
GO:GO:0009058	GO:GO:0009089	GO:GO:0009987	GO:GO:0055114	GO:GO:0070402	UniProt:K7VK29
InterPro:NAD(P)-bd_dom_sf	PFAM:PF01113	PFAM:PF05173	PANTHER:PTHR20836	PANTHER:PTHR20836:SF3	SUPFAM:SSF51735
TIGRFAMs:TIGR02130	UniParc:UPI0001BA9B57	EnsemblPlantsGene:Zm00001d047935	EnsemblPlants:Zm00001d047935_P003	EnsemblPlants:Zm00001d047935_T003	SEG:seg

Description

4-hydroxy-tetrahydrodipicolinate reductase 2 chloroplastic

Coordinates

chr9:-:145674247..145684191

Molecular Weight (calculated)

35948.1 Da

IEP (calculated)

6.583

GRAVY (calculated)

-0.178

Length

329 amino acids

Sequence
(BLAST)

001: MLSMRPPSTT LSRPLIWPRR GRLGGAAAPQ YVSAAAPAPA LEPAAPPESV SFPILVNGCT GNMGLSVAEA AALRGLHLVP VSFSSREKVE KTIQVGQTDI
101: QIYGPSKRED VVSSIADEFP DVIVVDYTGP NSVNSNAELY CKLGLPFVMG TTGGNKHLLY KSVQDSKNYA LISPQMGKQV VAFVAAMKIM AEQFPGAFSG
201: YHLEVLESHQ AGKLDTSGTA KDVIACFEKL GVSYDMNRMV KIRDPEQQLE MVGVPEEHIQ GHAFHLYHLT SPDDSVSFEF QHNVCGRSIY AEGTIDAAMF
301: LHRKVQSKDS KRIYNMDDVL REETCHKAY

Best Arabidopsis Sequence Match ( AT3G59890.2 )
(BLAST)

001: MAASSVFLHR PVHPHFSFSS RTNQMVPLGF KGRVSFIGNV KRCFPVVLSM GKSETFEEAG NSVAPGNGIS IMVNGCSGKM GKAVIKAADS AGVNIVPTSF
101: GSVEEAGQTV EVCGKEILVH GPTEREKVLS SVFEKYPELI VVDYTIPSAV NDNAELYGKV GVPFVMGTTG GDRTRLYKTV EESKIYAVIS PQMGKQVVAF
201: LAAMEIMSEQ FPGAFAGYSL EVMESHQASK LDASGTAKAV ISCFQKLGVS YDMDQIQLIR DPKQQIEVVG VPEEHVSGHA FHLYHLTSPD KTVSFEFQHN
301: VCGRSIYAEG TVDAVLFLAK KIRSKAEKRI YNMIDVLREG NMR

Arabidopsis Description

DAPB24-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LB01]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.