Factsheet for HORVU4Hr1G063600.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G099670.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44040.1	HORVU7Hr1G099670.1	AT3G20310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G226100.1	Wheat	mitochondrion	87.39	91.41
TraesCS4D01G226800.1	Wheat	mitochondrion	86.8	90.8
TraesCS4A01G069000.2	Wheat	mitochondrion	86.22	89.91
EER95181	Sorghum	mitochondrion	72.73	76.07
Os03t0245100-01	Rice	mitochondrion	71.85	75.38
Zm00001d047935_P003	Maize	plasma membrane	71.55	74.16
KRH06536	Soybean	cytosol	40.18	71.73
GSMUA_Achr4P25630_001	Banana	mitochondrion	55.13	63.51
GSMUA_Achr1P02550_001	Banana	plastid	59.82	61.63
KRH47978	Soybean	mitochondrion	56.01	55.52
PGSC0003DMT400073601	Potato	plastid	53.08	54.52
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	55.43	54.15
Solyc01g098380.2.1	Tomato	plastid	52.49	53.92
CDY30450	Canola	plastid	50.44	50.59
AT3G59890.1	Thale cress	plastid	51.61	50.43
Bra037671.1-P	Field mustard	plastid	50.15	50.29
CDY23412	Canola	plastid	51.03	50.14
AT2G44040.1	Thale cress	plastid	50.73	49.86
CDX95582	Canola	plastid	50.73	49.71
CDX83447	Canola	plastid	50.73	49.71
Bra000338.1-P	Field mustard	plastid	50.44	49.43
HORVU1Hr1G021120.1	Barley	mitochondrion, plastid	55.13	46.53
HORVU4Hr1G073970.1	Barley	cytosol	9.38	40.51
KRH06535	Soybean	mitochondrion, plastid	15.84	35.53

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.3.2	UniProt:A0A287PBZ6
InterPro:DHDPR_bac	InterPro:DapB_C	InterPro:DapB_N	InterPro:Dihydrodipicolinate_Rdtase_pln	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008839	GO:GO:0009058
GO:GO:0009089	GO:GO:0009987	GO:GO:0055114	GO:GO:0070402	EnsemblPlantsGene:HORVU4Hr1G063600	EnsemblPlants:HORVU4Hr1G063600.3
InterPro:NAD(P)-bd_dom_sf	PFAM:PF01113	PFAM:PF05173	PANTHER:PTHR20836	PANTHER:PTHR20836:SF3	SUPFAM:SSF51735
TIGRFAMs:TIGR02130	UniParc:UPI000B47B67A	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:531796119..531800105

Molecular Weight (calculated)

37061.3 Da

IEP (calculated)

5.173

GRAVY (calculated)

0.081

Length

341 amino acids

Sequence
(BLAST)

001: MLSVRAPPRA FSPSPPWRRR GRLDGFAAPR CVSAAPPVTT LETATARPAG VSFPILVNGC TGKMGVSVAE AATSRGLHLV PVSFSSRENL DKTIQIGDTD
101: IEIYGPSARE DVLSSVIDEF PDVVVVDYTA PDSVNSNAEL YCKLGVPFVM GTTGGDQQLL YKSVQDSKNY ALISPQMGKQ VVAFLAAMET IAEQFPGAFS
201: GYRLEVLESH QAGKLDTSGT AKAVIACFEK LGAVFDMDRM VKIRDPEQQL YMVGVPEEHI DGHAFHLYHL TSPDDSVSFE FQHNVCGRSI YAEGSVDAAI
301: FLYKKVCVYL VSYDCSNTCY LHFLFLITVL FLCNLGTING S

Best Arabidopsis Sequence Match ( AT2G44040.1 )
(BLAST)

001: MATNGLMASS SVFLHRPRIA FASRTNQTVG KYGKGRVSFM GIGTRRLPVV LSMTAMADSG EEAVKSVLPG NGISIMVNGC SGKMGKAVIK AADSAGVNIV
101: PISFGSAGED GQRVEVCGKE ITVHGPTERE KVLSSVFEKH PELIVVDYTI PSAVNDNAEL YSKVGVPFVM GTTGGDRNKL YETVEEAKIY AVISPQMGKQ
201: VVAFLAAMEI MAEQFPGAFS GYSLDVMESH QASKLDASGT AKAVISCFQE LGVSYDMDQI QLIRDPKQQV EMVGVPEEHI SGHAFHLYHL TSPDETVSFE
301: FQHNVCGRSI YAEGTVDAVL FLAKKIRLKA DQRIYNMIDV LREGNMR

Arabidopsis Description

DAPB14-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80574]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.