CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14334
KRH73797

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44040.1	KRH14334	AT3G20310.1	21798944
AT2G44040.1	KRH73797	AT3G20310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47978	Soybean	mitochondrion	98.43	54.65
GSMUA_Achr4P25630_001	Banana	mitochondrion	78.01	50.34
Solyc01g098380.2.1	Tomato	plastid	82.2	47.29
CDY30450	Canola	plastid	83.77	47.06
PGSC0003DMT400073601	Potato	plastid	81.68	46.99
Bra037671.1-P	Field mustard	plastid	83.25	46.76
AT2G44040.1	Thale cress	plastid	84.82	46.69
Bra000338.1-P	Field mustard	plastid	84.82	46.55
CDX83447	Canola	plastid	84.82	46.55
CDX95582	Canola	plastid	84.82	46.55
GSMUA_Achr1P02550_001	Banana	plastid	80.63	46.53
Os03t0245100-01	Rice	mitochondrion	79.06	46.46
AT3G59890.1	Thale cress	plastid	84.82	46.42
CDY23412	Canola	plastid	83.77	46.11
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	83.25	45.56
TraesCS4D01G226800.1	Wheat	mitochondrion	77.49	45.4
EER95181	Sorghum	mitochondrion	76.44	44.79
TraesCS4B01G226100.1	Wheat	mitochondrion	76.44	44.79
Os02t0436400-01	Rice	plastid	80.1	44.61
TraesCS4A01G069000.2	Wheat	mitochondrion	75.92	44.34
OQU80721	Sorghum	plastid	79.58	44.31
Zm00001d049956_P002	Maize	plastid	79.06	44.02
Zm00001d047935_P003	Maize	plasma membrane	74.87	43.47
TraesCS1A01G102500.1	Wheat	plastid	77.49	43.4
TraesCS1D01G094400.1	Wheat	plastid	76.96	43.11
HORVU4Hr1G063600.3	Barley	mitochondrion	71.73	40.18
HORVU1Hr1G021120.1	Barley	mitochondrion, plastid	76.44	36.14
TraesCS1B01G113300.2	Wheat	plastid	51.83	27.27
HORVU4Hr1G073970.1	Barley	cytosol	2.62	6.33
KRH06535	Soybean	mitochondrion, plastid	0.0	0.0

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	Gene3D:3.40.50.720	MapMan:4.1.2.2.3.2	UniProt:A0A0R0FUK2	EMBL:ACUP02009850
InterPro:DHDPR_bac	InterPro:DapB_C	InterPro:Dihydrodipicolinate_Rdtase_pln	EnsemblPlantsGene:GLYMA_16G0289001	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008839	GO:GO:0009058
GO:GO:0009089	GO:GO:0009987	GO:GO:0055114	GO:GO:0070402	EnsemblPlants:KRH06536	ProteinID:KRH06536
ProteinID:KRH06536.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF05173	PANTHER:PTHR20836	PANTHER:PTHR20836:SF3	MetaCyc:PWY-2941
MetaCyc:PWY-2942	MetaCyc:PWY-5097	SUPFAM:SSF51735	TIGRFAMs:TIGR02130	UniParc:UPI0006EDDD77	:

Description

hypothetical protein

Coordinates

chr16:+:2767975..2770348

Molecular Weight (calculated)

21175.5 Da

IEP (calculated)

6.148

GRAVY (calculated)

-0.111

Length

191 amino acids

Sequence
(BLAST)

001: NAELYSKVGV PFVMGTTGGD RDLLHKTVLD SNIYAVISPQ MGKQVVAFLA AMEIMAEQFP GAFSGYSLQV LESHQASKVD ASGTAKAVIS CFNKLGVSYD
101: MDQIKLIRDP RQQLEMVGVP EEHLSGHAFH MYHLTSPDDT VTFEFQHNVC GRSIYAEGTV DAVLFLAKKI ETKDPKRLYN MIDVLREGNM R

Best Arabidopsis Sequence Match ( AT2G44040.1 )
(BLAST)

001: MATNGLMASS SVFLHRPRIA FASRTNQTVG KYGKGRVSFM GIGTRRLPVV LSMTAMADSG EEAVKSVLPG NGISIMVNGC SGKMGKAVIK AADSAGVNIV
101: PISFGSAGED GQRVEVCGKE ITVHGPTERE KVLSSVFEKH PELIVVDYTI PSAVNDNAEL YSKVGVPFVM GTTGGDRNKL YETVEEAKIY AVISPQMGKQ
201: VVAFLAAMEI MAEQFPGAFS GYSLDVMESH QASKLDASGT AKAVISCFQE LGVSYDMDQI QLIRDPKQQV EMVGVPEEHI SGHAFHLYHL TSPDETVSFE
301: FQHNVCGRSI YAEGTVDAVL FLAKKIRLKA DQRIYNMIDV LREGNMR

Arabidopsis Description

DAPB14-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80574]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.