Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os04t0669200-01 | |
| Os06t0691100-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G44040.1 | Os04t0669200-01 | AT3G20310.1 | 21798944 |
| AT2G44040.1 | Os06t0691100-00 | AT3G20310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G094400.1 | Wheat | plastid | 83.67 | 84.16 |
| OQU80721 | Sorghum | plastid | 83.38 | 83.38 |
| TraesCS1A01G102500.1 | Wheat | plastid | 82.8 | 83.28 |
| Zm00001d049956_P002 | Maize | plastid | 82.8 | 82.8 |
| KRH06536 | Soybean | cytosol | 44.61 | 80.1 |
| GSMUA_Achr4P25630_001 | Banana | mitochondrion | 59.18 | 68.58 |
| HORVU1Hr1G021120.1 | Barley | mitochondrion, plastid | 80.76 | 68.56 |
| HORVU4Hr1G073970.1 | Barley | cytosol | 15.74 | 68.35 |
| GSMUA_Achr1P02550_001 | Banana | plastid | 64.72 | 67.07 |
| VIT_05s0094g01480.t01 | Wine grape | mitochondrion, plastid | 63.85 | 62.75 |
| Os03t0245100-01 | Rice | mitochondrion | 59.18 | 62.46 |
| KRH47978 | Soybean | mitochondrion | 60.35 | 60.17 |
| TraesCS1B01G113300.2 | Wheat | plastid | 63.56 | 60.06 |
| PGSC0003DMT400073601 | Potato | plastid | 57.14 | 59.04 |
| Solyc01g098380.2.1 | Tomato | plastid | 55.98 | 57.83 |
| CDY30450 | Canola | plastid | 55.98 | 56.47 |
| Bra037671.1-P | Field mustard | plastid | 55.69 | 56.18 |
| AT3G59890.1 | Thale cress | plastid | 56.27 | 55.3 |
| CDX95582 | Canola | plastid | 55.98 | 55.17 |
| CDX83447 | Canola | plastid | 55.98 | 55.17 |
| Bra000338.1-P | Field mustard | plastid | 55.98 | 55.17 |
| AT2G44040.1 | Thale cress | plastid | 55.69 | 55.04 |
| CDY23412 | Canola | plastid | 55.1 | 54.47 |
| KRH06535 | Soybean | mitochondrion, plastid | 15.45 | 34.87 |
Protein Annotations
| KEGG:00261+1.17.1.8 | KEGG:00300+1.17.1.8 | Gene3D:3.30.360.10 | Gene3D:3.40.50.720 | MapMan:4.1.2.2.3.2 | EntrezGene:4329224 |
| EMBL:AK065673 | ProteinID:BAD37640.1 | ProteinID:BAF08650.1 | ProteinID:BAS78462.1 | InterPro:DHDPR_bac | InterPro:DapB_C |
| InterPro:DapB_N | InterPro:Dihydrodipicolinate_Rdtase_pln | ProteinID:EEE56888.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008652 | GO:GO:0008839 | GO:GO:0009058 | GO:GO:0009085 | GO:GO:0009089 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009987 | GO:GO:0016491 | GO:GO:0019877 |
| GO:GO:0055114 | GO:GO:0070402 | InterPro:NAD(P)-bd_dom_sf | EnsemblPlantsGene:Os02g0436400 | EnsemblPlants:Os02t0436400-01 | PFAM:PF01113 |
| PFAM:PF05173 | PANTHER:PTHR20836 | PANTHER:PTHR20836:SF4 | UniProt:Q67W29 | SUPFAM:SSF51735 | TIGRFAMs:TIGR02130 |
| UniParc:UPI0000426335 | RefSeq:XP_015622998.1 | SEG:seg | : | : | : |
Description
DAPB1NAD(P)-binding domain containing protein. (Os02t0436400-01)
Coordinates
chr2:-:13917306..13923016
Molecular Weight (calculated)
37383.2 Da
IEP (calculated)
7.047
GRAVY (calculated)
-0.003
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MLASTFATHP AAAAAARRRG PIRWRLPFCS QIVTVTLRRR FPMARLSITN ALASQSLESA PAAPPKHSFP ILVNSCTGKM GKAVAEAAVS AGLQLVPVSF
101: SAIEVPDGKV EICDREIYIR DPSEGESILP SIAKDYPDMI VVDYTVPDAV NANAELYCKL GLPFVMGTTG GNRQLLHKTV EDANVYAVIS PQMGKQVVAF
201: LAAMEIMAEQ FPGAFSGYKL EVMESHQATK LDISGTAKAV ISCFQKLGVS FNLNEVKQVR DPQEQLTLVG VPEEHLSGHA FHMYHLTSPD ETVSFEFQHN
301: VCGRSIYAEG TVDAALFLHK KIQSGANKKL YDMIDVLREG NMR
101: SAIEVPDGKV EICDREIYIR DPSEGESILP SIAKDYPDMI VVDYTVPDAV NANAELYCKL GLPFVMGTTG GNRQLLHKTV EDANVYAVIS PQMGKQVVAF
201: LAAMEIMAEQ FPGAFSGYKL EVMESHQATK LDISGTAKAV ISCFQKLGVS FNLNEVKQVR DPQEQLTLVG VPEEHLSGHA FHMYHLTSPD ETVSFEFQHN
301: VCGRSIYAEG TVDAALFLHK KIQSGANKKL YDMIDVLREG NMR
001: MATNGLMASS SVFLHRPRIA FASRTNQTVG KYGKGRVSFM GIGTRRLPVV LSMTAMADSG EEAVKSVLPG NGISIMVNGC SGKMGKAVIK AADSAGVNIV
101: PISFGSAGED GQRVEVCGKE ITVHGPTERE KVLSSVFEKH PELIVVDYTI PSAVNDNAEL YSKVGVPFVM GTTGGDRNKL YETVEEAKIY AVISPQMGKQ
201: VVAFLAAMEI MAEQFPGAFS GYSLDVMESH QASKLDASGT AKAVISCFQE LGVSYDMDQI QLIRDPKQQV EMVGVPEEHI SGHAFHLYHL TSPDETVSFE
301: FQHNVCGRSI YAEGTVDAVL FLAKKIRLKA DQRIYNMIDV LREGNMR
101: PISFGSAGED GQRVEVCGKE ITVHGPTERE KVLSSVFEKH PELIVVDYTI PSAVNDNAEL YSKVGVPFVM GTTGGDRNKL YETVEEAKIY AVISPQMGKQ
201: VVAFLAAMEI MAEQFPGAFS GYSLDVMESH QASKLDASGT AKAVISCFQE LGVSYDMDQI QLIRDPKQQV EMVGVPEEHI SGHAFHLYHL TSPDETVSFE
301: FQHNVCGRSI YAEGTVDAVL FLAKKIRLKA DQRIYNMIDV LREGNMR
Arabidopsis Description
DAPB14-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80574]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.