Factsheet for Zm00001d049956_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001907_P001
Zm00001d014565_P001
Zm00001d015639_P001
Zm00001d026563_P001
Zm00001d036536_P001
Zm00001d053707_P001
Zm00001d053859_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44040.1	Zm00001d001907_P001	AT3G20310.1	21798944
AT2G44040.1	Zm00001d014565_P001	AT3G20310.1	21798944
AT2G44040.1	Zm00001d015639_P001	AT3G20310.1	21798944
AT2G44040.1	Zm00001d026563_P001	AT3G20310.1	21798944
AT2G44040.1	Zm00001d036536_P001	AT3G20310.1	21798944
AT2G44040.1	Zm00001d053707_P001	AT3G20310.1	21798944
AT2G44040.1	Zm00001d053859_P001	AT3G20310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80721	Sorghum	plastid	92.71	92.71
Os02t0436400-01	Rice	plastid	82.8	82.8
TraesCS1D01G094400.1	Wheat	plastid	79.88	80.35
TraesCS1A01G102500.1	Wheat	plastid	78.72	79.18
KRH06536	Soybean	cytosol	44.02	79.06
GSMUA_Achr4P25630_001	Banana	mitochondrion	57.43	66.55
GSMUA_Achr1P02550_001	Banana	plastid	64.14	66.47
HORVU1Hr1G021120.1	Barley	mitochondrion, plastid	77.84	66.09
HORVU4Hr1G073970.1	Barley	cytosol	14.29	62.03
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	62.39	61.32
Zm00001d047935_P003	Maize	plasma membrane	56.27	58.66
KRH47978	Soybean	mitochondrion	58.31	58.14
PGSC0003DMT400073601	Potato	plastid	56.27	58.13
Solyc01g098380.2.1	Tomato	plastid	55.1	56.93
TraesCS1B01G113300.2	Wheat	plastid	60.06	56.75
CDY30450	Canola	plastid	55.39	55.88
Bra037671.1-P	Field mustard	plastid	55.1	55.59
AT3G59890.1	Thale cress	plastid	56.27	55.3
AT2G44040.1	Thale cress	plastid	55.39	54.76
CDX83447	Canola	plastid	55.39	54.6
Bra000338.1-P	Field mustard	plastid	55.39	54.6
CDY23412	Canola	plastid	55.1	54.47
CDX95582	Canola	plastid	55.1	54.31
KRH06535	Soybean	mitochondrion, plastid	13.99	31.58

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.3.2	ProteinID:AQK51663.1
UniProt:B4FH75	EMBL:BT036463	InterPro:DHDPR_bac	InterPro:DapB_C	InterPro:DapB_N	InterPro:Dihydrodipicolinate_Rdtase_pln
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0008839	GO:GO:0009058	GO:GO:0009089	GO:GO:0009987	GO:GO:0055114	GO:GO:0070402
InterPro:NAD(P)-bd_dom_sf	PFAM:PF01113	PFAM:PF05173	PANTHER:PTHR20836	PANTHER:PTHR20836:SF3	SUPFAM:SSF51735
TIGRFAMs:TIGR02130	UniParc:UPI00017B6963	EnsemblPlantsGene:Zm00001d049956	EnsemblPlants:Zm00001d049956_P002	EnsemblPlants:Zm00001d049956_T002	SEG:seg

Description

4-hydroxy-tetrahydrodipicolinate reductase 2 chloroplastic

Coordinates

chr4:+:55420638..55429063

Molecular Weight (calculated)

37311.2 Da

IEP (calculated)

6.843

GRAVY (calculated)

0.054

Length

343 amino acids

Sequence
(BLAST)

001: MISTTVAAHP ATVTALRRRY PLRPRQPLCA PIFTAATRQC MATAKPSVTN ALANLSVESA PAALPKLSFP ILVNSCTGKM GKAVAEAAVS AGLQLVPVSF
101: SAIEVPDRKI EICDREIFIH DPSESEKILP TIVKEYPNVI VVDYTVPDAV NANAELYCKF GLPFVMGTTG GNRQLLHKTV HDANIYAVIS PQMGKQVVAF
201: LAAMEIMSEQ FPGAFSGYKL EVMESHQATK LDISGTAKAV ISCFQKLGVS FDMNEVKQVR DPEEQVTLVG VPEEHLGGHA FHMYHLTSPD GTVSFEFQHN
301: VCGRSIYAEG TVDAAMFLYT KIQSGASKKL YDMIDVLREG NMR

Best Arabidopsis Sequence Match ( AT3G59890.1 )
(BLAST)

001: MAANGLMAAS SVFLHRPVHP HFSFSSRTNQ MVPLGFKGRV SFIGNVKRCF PVVLSMGKSE TFEEAGNSVA PGNGISIMVN GCSGKMGKAV IKAADSAGVN
101: IVPTSFGSVE EAGQTVEVCG KEILVHGPTE REKVLSSVFE KYPELIVVDY TIPSAVNDNA ELYGKVGVPF VMGTTGGDRT RLYKTVEESK IYAVISPQMG
201: KQVVAFLAAM EIMSEQFPGA FAGYSLEVME SHQASKLDAS GTAKAVISCF QKLGVSYDMD QIQLIRDPKQ QIEVVGVPEE HVSGHAFHLY HLTSPDKTVS
301: FEFQHNVCGR SIYAEGTVDA VLFLAKKIRS KAEKRIYNMI DVLREGNMR

Arabidopsis Description

DAPB24-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LB01]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.