Factsheet for HORVU1Hr1G021120.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G099670.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44040.1	HORVU7Hr1G099670.1	AT3G20310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G102500.1	Wheat	plastid	78.47	92.96
Os02t0436400-01	Rice	plastid	68.56	80.76
OQU80721	Sorghum	plastid	67.57	79.59
HORVU4Hr1G073970.1	Barley	cytosol	15.35	78.48
Zm00001d049956_P002	Maize	plastid	66.09	77.84
KRH06536	Soybean	cytosol	36.14	76.44
GSMUA_Achr4P25630_001	Banana	mitochondrion	49.75	67.91
GSMUA_Achr1P02550_001	Banana	plastid	54.21	66.16
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	51.24	59.31
KRH47978	Soybean	mitochondrion	49.51	58.14
Solyc01g098380.2.1	Tomato	plastid	46.29	56.33
PGSC0003DMT400073601	Potato	plastid	46.29	56.33
CDY30450	Canola	plastid	46.78	55.59
Bra037671.1-P	Field mustard	plastid	46.53	55.29
HORVU4Hr1G063600.3	Barley	mitochondrion	46.53	55.13
AT3G59890.1	Thale cress	plastid	47.28	54.73
AT2G44040.1	Thale cress	plastid	46.53	54.18
CDY23412	Canola	plastid	46.29	53.89
Bra000338.1-P	Field mustard	plastid	46.29	53.74
CDX83447	Canola	plastid	46.29	53.74
CDX95582	Canola	plastid	46.29	53.74
KRH06535	Soybean	mitochondrion, plastid	13.37	35.53

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.3.2	UniProt:A0A287EUR9
InterPro:DHDPR_bac	InterPro:DapB_C	InterPro:DapB_N	InterPro:Dihydrodipicolinate_Rdtase_pln	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008839	GO:GO:0009058
GO:GO:0009089	GO:GO:0009987	GO:GO:0055114	GO:GO:0070402	EnsemblPlantsGene:HORVU1Hr1G021120	EnsemblPlants:HORVU1Hr1G021120.1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF01113	PFAM:PF05173	PANTHER:PTHR20836	PANTHER:PTHR20836:SF3	SUPFAM:SSF51735
TIGRFAMs:TIGR02130	UniParc:UPI000B46BEDA	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:84326638..84338930

Molecular Weight (calculated)

43682.5 Da

IEP (calculated)

8.582

GRAVY (calculated)

-0.178

Length

404 amino acids

Sequence
(BLAST)

001: RTQKGKKKHT TGPAASAHSP EPRKAKTLER SSAARHSPAA AHHALPPAPS SFSDHLPPKR TEMLSAAFAV HPATVAPRRH SVRLRQQFCA PIGTATPRRR
101: LPVAMLSITN AVASQSRESA PASAHRKLSF PILVNSCTGK MGKSVAEAAV AAGLQLVPVS FSAIEVPDGK LNICDRDIHI HDPSESESIL RSIAKDYPDM
201: IVVDYTVPDA VNANAELYCK LGLPFVMGTT GGDRQLLNKI VQDANVYAVI SPQMGKQVVA FLAAMEIMAE KFPGAFAGYK LEVMESHQAT KLDVSGTAKA
301: VISCFQKLGV AFDLNEVNLV RDPEEQLAIV GVPEEHLGGH AFHNYHLTSP DETVSFEFQH NVCGRSIYAE GTVDAAMFLH TKIRSGADKK LYDMIDVLRE
401: GNMR

Best Arabidopsis Sequence Match ( AT3G59890.1 )
(BLAST)

001: MAANGLMAAS SVFLHRPVHP HFSFSSRTNQ MVPLGFKGRV SFIGNVKRCF PVVLSMGKSE TFEEAGNSVA PGNGISIMVN GCSGKMGKAV IKAADSAGVN
101: IVPTSFGSVE EAGQTVEVCG KEILVHGPTE REKVLSSVFE KYPELIVVDY TIPSAVNDNA ELYGKVGVPF VMGTTGGDRT RLYKTVEESK IYAVISPQMG
201: KQVVAFLAAM EIMSEQFPGA FAGYSLEVME SHQASKLDAS GTAKAVISCF QKLGVSYDMD QIQLIRDPKQ QIEVVGVPEE HVSGHAFHLY HLTSPDKTVS
301: FEFQHNVCGR SIYAEGTVDA VLFLAKKIRS KAEKRIYNMI DVLREGNMR

Arabidopsis Description

DAPB24-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LB01]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.