Factsheet for Solyc01g098380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3
vacuole 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g049490.1.1
Solyc12g005960.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44040.1	Solyc07g049490.1.1	AT3G20310.1	21798944
AT2G44040.1	Solyc12g005960.1.1	AT3G20310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073601	Potato	plastid	95.48	95.48
KRH06536	Soybean	cytosol	47.29	82.2
CDY30450	Canola	plastid	66.87	65.29
Bra037671.1-P	Field mustard	plastid	66.57	65.0
CDX83447	Canola	plastid	68.07	64.94
AT2G44040.1	Thale cress	plastid	67.77	64.84
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	68.07	64.76
Bra000338.1-P	Field mustard	plastid	67.77	64.66
CDX95582	Canola	plastid	67.47	64.37
CDY23412	Canola	plastid	67.17	64.27
GSMUA_Achr4P25630_001	Banana	mitochondrion	57.23	64.19
AT3G59890.1	Thale cress	plastid	65.96	62.75
KRH47978	Soybean	mitochondrion	64.76	62.5
GSMUA_Achr1P02550_001	Banana	plastid	61.45	61.63
Os03t0245100-01	Rice	mitochondrion	57.83	59.08
EER95181	Sorghum	mitochondrion	56.63	57.67
TraesCS4D01G226800.1	Wheat	mitochondrion	56.33	57.36
TraesCS4B01G226100.1	Wheat	mitochondrion	56.02	57.06
TraesCS4A01G069000.2	Wheat	mitochondrion	55.42	56.27
OQU80721	Sorghum	plastid	57.83	55.98
Os02t0436400-01	Rice	plastid	57.83	55.98
Zm00001d047935_P003	Maize	plasma membrane	54.82	55.32
Zm00001d049956_P002	Maize	plastid	56.93	55.1
TraesCS1A01G102500.1	Wheat	plastid	55.72	54.25
TraesCS1D01G094400.1	Wheat	plastid	55.42	53.96
HORVU4Hr1G063600.3	Barley	mitochondrion	53.92	52.49
HORVU1Hr1G021120.1	Barley	mitochondrion, plastid	56.33	46.29
TraesCS1B01G113300.2	Wheat	plastid	41.27	37.74
KRH06535	Soybean	mitochondrion, plastid	16.87	36.84
HORVU4Hr1G073970.1	Barley	cytosol	7.83	32.91

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.3.2	InterPro:DHDPR_bac
InterPro:DapB_C	InterPro:DapB_N	InterPro:Dihydrodipicolinate_Rdtase_pln	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0008839	GO:GO:0009058	GO:GO:0009089	GO:GO:0009536	GO:GO:0009570
GO:GO:0009987	GO:GO:0019877	GO:GO:0055114	GO:GO:0070402	UniProt:K4B0M5	InterPro:NAD(P)-bd_dom_sf
PFAM:PF01113	PFAM:PF05173	PANTHER:PTHR20836	PANTHER:PTHR20836:SF4	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc01g098380.2
EnsemblPlants:Solyc01g098380.2.1	TIGRFAMs:TIGR02130	UniParc:UPI00027685DE	:	:	:

Description

No Description!

Coordinates

chr1:-:88904807..88910487

Molecular Weight (calculated)

36216.0 Da

IEP (calculated)

6.399

GRAVY (calculated)

-0.003

Length

332 amino acids

Sequence
(BLAST)

001: MWAIIKVPLY INGGGMRYSS SSKNGCNSFV RGRKYSVKMC SAPAQNVEVL VKSKIEPLPI MVNGCTGKMG RAVLEASIAA GLQPVPICFG GPQDEGKTVE
101: AGGKEIIVHG PSDRENLLSS VFEEHPNLIV VDYTLPAAVN DNAELYCKVG VPFVMGTTGG DREKLYKTVV DSKVYAVISP QMGKQVVAFL AAMEIMAEQF
201: PGAFSGYSLQ VMESHQASKL DTSGTAKAVI SCFENLGVSF DLDKVQLIRD PVQQVEMVGV PEEYLLGHAF HMYHLTSPDG TVSFEFQHNV CGRSIYAEGT
301: VDAILFLAKK VKLKEEKRIY DMIDVLREGN MR

Best Arabidopsis Sequence Match ( AT2G44040.1 )
(BLAST)

001: MATNGLMASS SVFLHRPRIA FASRTNQTVG KYGKGRVSFM GIGTRRLPVV LSMTAMADSG EEAVKSVLPG NGISIMVNGC SGKMGKAVIK AADSAGVNIV
101: PISFGSAGED GQRVEVCGKE ITVHGPTERE KVLSSVFEKH PELIVVDYTI PSAVNDNAEL YSKVGVPFVM GTTGGDRNKL YETVEEAKIY AVISPQMGKQ
201: VVAFLAAMEI MAEQFPGAFS GYSLDVMESH QASKLDASGT AKAVISCFQE LGVSYDMDQI QLIRDPKQQV EMVGVPEEHI SGHAFHLYHL TSPDETVSFE
301: FQHNVCGRSI YAEGTVDAVL FLAKKIRLKA DQRIYNMIDV LREGNMR

Arabidopsis Description

DAPB14-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80574]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.