Factsheet for TraesCS4A01G069000.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G542700.1
TraesCS2B01G572500.1
TraesCS2D01G543900.1
TraesCS6A01G131200.1
TraesCS6A01G171900.1
TraesCS6B01G159600.1
TraesCS6B01G199800.1
TraesCS6D01G121100.1
TraesCS6D01G161300.1
TraesCS7A01G436400.1
TraesCS7B01G335700.1
TraesCS7D01G426700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44040.1	TraesCS2A01G542700.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS2B01G572500.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS2D01G543900.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6A01G131200.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6A01G171900.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6B01G159600.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6B01G199800.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6D01G121100.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6D01G161300.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS7A01G436400.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS7B01G335700.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS7D01G426700.1	AT3G20310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G226800.1	Wheat	mitochondrion	96.64	96.93
TraesCS4B01G226100.1	Wheat	mitochondrion	96.02	96.32
HORVU4Hr1G063600.3	Barley	mitochondrion	89.91	86.22
Os03t0245100-01	Rice	mitochondrion	78.9	79.38
EER95181	Sorghum	mitochondrion	77.98	78.22
Zm00001d047935_P003	Maize	plasma membrane	76.45	75.99
KRH06536	Soybean	cytosol	44.34	75.92
GSMUA_Achr4P25630_001	Banana	mitochondrion	59.94	66.22
GSMUA_Achr1P02550_001	Banana	plastid	64.53	63.75
TraesCS1A01G102500.1	Wheat	plastid	60.55	58.06
KRH47978	Soybean	mitochondrion	60.24	57.27
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	60.55	56.73
PGSC0003DMT400073601	Potato	plastid	56.57	55.72
Solyc01g098380.2.1	Tomato	plastid	56.27	55.42
AT3G59890.1	Thale cress	plastid	56.57	53.01
CDY30450	Canola	plastid	54.43	52.35
Bra037671.1-P	Field mustard	plastid	54.13	52.06
CDY23412	Canola	plastid	55.05	51.87
CDX83447	Canola	plastid	55.05	51.72
Bra000338.1-P	Field mustard	plastid	55.05	51.72
CDX95582	Canola	plastid	55.05	51.72
AT2G44040.1	Thale cress	plastid	54.74	51.59
KRH06535	Soybean	mitochondrion, plastid	16.51	35.53

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.3.2	InterPro:DHDPR_bac
InterPro:DapB_C	InterPro:DapB_N	InterPro:Dihydrodipicolinate_Rdtase_pln	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008839	GO:GO:0009058	GO:GO:0009089
GO:GO:0009987	GO:GO:0055114	GO:GO:0070402	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01113	PFAM:PF05173
PANTHER:PTHR20836	PANTHER:PTHR20836:SF3	SUPFAM:SSF51735	TIGRFAMs:TIGR02130	EnsemblPlantsGene:TraesCS4A01G069000	EnsemblPlants:TraesCS4A01G069000.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:67261565..67270075

Molecular Weight (calculated)

35626.4 Da

IEP (calculated)

4.858

GRAVY (calculated)

-0.125

Length

327 amino acids

Sequence
(BLAST)

001: MLSLRAPPRT LSASPWRRRG RLDGFAAPRC VSAAPPATTL ETATARPAGV SFPILVNGCT GKMGVSVAEA ATSRGLHLVP VSFSSRENLD KTIQVGDTDV
101: EIYGPSARED VLSSVIDEYP DVVVVDYTAP DSVNSNAELY CKLGVPFVMG TTGGDQQLLY KSVQDSENYA LISPQMGKQV VAFLAAMETI AEQFPGAFSG
201: YRLEVLESHQ AGKLDTSGTG KAVIACFEKL GAVFDMERQM VKIRDPEQQL YMVGVPEEHI EGHAFHLYHL TSPDDSVSFE FQHNVCGRSI YAEGSVDAAV
301: FLYKKVQSMD PKRIYNMIDV LQEGDMR

Best Arabidopsis Sequence Match ( AT2G44040.1 )
(BLAST)

001: MATNGLMASS SVFLHRPRIA FASRTNQTVG KYGKGRVSFM GIGTRRLPVV LSMTAMADSG EEAVKSVLPG NGISIMVNGC SGKMGKAVIK AADSAGVNIV
101: PISFGSAGED GQRVEVCGKE ITVHGPTERE KVLSSVFEKH PELIVVDYTI PSAVNDNAEL YSKVGVPFVM GTTGGDRNKL YETVEEAKIY AVISPQMGKQ
201: VVAFLAAMEI MAEQFPGAFS GYSLDVMESH QASKLDASGT AKAVISCFQE LGVSYDMDQI QLIRDPKQQV EMVGVPEEHI SGHAFHLYHL TSPDETVSFE
301: FQHNVCGRSI YAEGTVDAVL FLAKKIRLKA DQRIYNMIDV LREGNMR

Arabidopsis Description

DAPB14-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80574]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.