CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14334
KRH73797

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44040.1	KRH14334	AT3G20310.1	21798944
AT2G44040.1	KRH73797	AT3G20310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47978	Soybean	mitochondrion	88.16	38.95
HORVU4Hr1G073970.1	Barley	cytosol	15.79	30.38
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	50.66	22.06
AT3G59890.1	Thale cress	plastid	42.76	18.62
CDY30450	Canola	plastid	40.13	17.94
Bra037671.1-P	Field mustard	plastid	40.13	17.94
CDY23412	Canola	plastid	40.79	17.87
GSMUA_Achr1P02550_001	Banana	plastid	38.82	17.82
AT2G44040.1	Thale cress	plastid	39.47	17.29
CDX95582	Canola	plastid	39.47	17.24
Bra000338.1-P	Field mustard	plastid	39.47	17.24
CDX83447	Canola	plastid	39.47	17.24
Solyc01g098380.2.1	Tomato	plastid	36.84	16.87
PGSC0003DMT400073601	Potato	plastid	36.84	16.87
TraesCS4D01G226800.1	Wheat	mitochondrion	35.53	16.56
TraesCS4A01G069000.2	Wheat	mitochondrion	35.53	16.51
TraesCS4B01G226100.1	Wheat	mitochondrion	34.87	16.26
HORVU4Hr1G063600.3	Barley	mitochondrion	35.53	15.84
Os02t0436400-01	Rice	plastid	34.87	15.45
TraesCS1A01G102500.1	Wheat	plastid	34.21	15.25
TraesCS1D01G094400.1	Wheat	plastid	33.55	14.96
OQU80721	Sorghum	plastid	32.24	14.29
EER95181	Sorghum	mitochondrion	30.26	14.11
Zm00001d049956_P002	Maize	plastid	31.58	13.99
Os03t0245100-01	Rice	mitochondrion	29.61	13.85
TraesCS1B01G113300.2	Wheat	plastid	32.89	13.77
Zm00001d047935_P003	Maize	plasma membrane	29.61	13.68
GSMUA_Achr4P25630_001	Banana	mitochondrion	26.32	13.51
HORVU1Hr1G021120.1	Barley	mitochondrion, plastid	35.53	13.37
KRH06536	Soybean	cytosol	0.0	0.0

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	Gene3D:3.40.50.720	MapMan:35.1	UniProt:A0A0R0FKM0	EMBL:ACUP02009849
InterPro:DHDPR_bac	InterPro:DapB_N	EnsemblPlantsGene:GLYMA_16G0289002	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0008839	GO:GO:0009058	GO:GO:0009089	GO:GO:0009987	GO:GO:0055114
EnsemblPlants:KRH06535	ProteinID:KRH06535	ProteinID:KRH06535.1	PFAM:PF01113	PANTHER:PTHR20836	PANTHER:PTHR20836:SF4
MetaCyc:PWY-2941	MetaCyc:PWY-2942	MetaCyc:PWY-5097	UniParc:UPI0006EDB9CF	:	:

Description

hypothetical protein

Coordinates

chr16:+:2766779..2767431

Molecular Weight (calculated)

16204.4 Da

IEP (calculated)

8.750

GRAVY (calculated)

-0.072

Length

152 amino acids

Sequence
(BLAST)

001: MATSLLKTPL NVFNRHHNHV AFFSNGTSAR SSAPISQKRR SRPFPVVSMA STPVQTSLEK TELSSKSTGL PIMVNACTGK MGKAVINAAE AAGLNVVPVS
101: FGCEEESGQT FQIGGKEFLV HGPSDRESVL ASVLDKYPNL IVVDYTIPDA VN

Best Arabidopsis Sequence Match ( AT3G59890.2 )
(BLAST)

001: MAASSVFLHR PVHPHFSFSS RTNQMVPLGF KGRVSFIGNV KRCFPVVLSM GKSETFEEAG NSVAPGNGIS IMVNGCSGKM GKAVIKAADS AGVNIVPTSF
101: GSVEEAGQTV EVCGKEILVH GPTEREKVLS SVFEKYPELI VVDYTIPSAV NDNAELYGKV GVPFVMGTTG GDRTRLYKTV EESKIYAVIS PQMGKQVVAF
201: LAAMEIMSEQ FPGAFAGYSL EVMESHQASK LDASGTAKAV ISCFQKLGVS YDMDQIQLIR DPKQQIEVVG VPEEHVSGHA FHLYHLTSPD KTVSFEFQHN
301: VCGRSIYAEG TVDAVLFLAK KIRSKAEKRI YNMIDVLREG NMR

Arabidopsis Description

DAPB24-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LB01]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.