Factsheet for TraesCS4B01G226100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G542700.1
TraesCS2B01G572500.1
TraesCS2D01G543900.1
TraesCS6A01G131200.1
TraesCS6A01G171900.1
TraesCS6B01G159600.1
TraesCS6B01G199800.1
TraesCS6D01G121100.1
TraesCS6D01G161300.1
TraesCS7A01G436400.1
TraesCS7B01G335700.1
TraesCS7D01G426700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44040.1	TraesCS2A01G542700.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS2B01G572500.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS2D01G543900.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6A01G131200.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6A01G171900.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6B01G159600.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6B01G199800.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6D01G121100.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6D01G161300.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS7A01G436400.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS7B01G335700.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS7D01G426700.1	AT3G20310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G226800.1	Wheat	mitochondrion	98.47	98.47
TraesCS4A01G069000.2	Wheat	mitochondrion	96.32	96.02
HORVU4Hr1G063600.3	Barley	mitochondrion	91.41	87.39
Os03t0245100-01	Rice	mitochondrion	79.45	79.69
EER95181	Sorghum	mitochondrion	78.22	78.22
KRH06536	Soybean	cytosol	44.79	76.44
Zm00001d047935_P003	Maize	plasma membrane	76.99	76.29
GSMUA_Achr4P25630_001	Banana	mitochondrion	60.12	66.22
GSMUA_Achr1P02550_001	Banana	plastid	64.72	63.75
KRH47978	Soybean	mitochondrion	61.04	57.85
PGSC0003DMT400073601	Potato	plastid	57.36	56.33
Solyc01g098380.2.1	Tomato	plastid	57.06	56.02
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	59.82	55.87
AT3G59890.1	Thale cress	plastid	55.83	52.15
CDY30450	Canola	plastid	54.29	52.06
Bra037671.1-P	Field mustard	plastid	53.99	51.76
CDY23412	Canola	plastid	54.91	51.59
CDX95582	Canola	plastid	54.91	51.44
CDX83447	Canola	plastid	54.91	51.44
Bra000338.1-P	Field mustard	plastid	54.91	51.44
AT2G44040.1	Thale cress	plastid	54.6	51.3
TraesCS1B01G113300.2	Wheat	plastid	46.63	41.87
KRH06535	Soybean	mitochondrion, plastid	16.26	34.87

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.3.2	InterPro:DHDPR_bac
InterPro:DapB_C	InterPro:DapB_N	InterPro:Dihydrodipicolinate_Rdtase_pln	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008839	GO:GO:0009058	GO:GO:0009089
GO:GO:0009987	GO:GO:0055114	GO:GO:0070402	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01113	PFAM:PF05173
PANTHER:PTHR20836	PANTHER:PTHR20836:SF3	SUPFAM:SSF51735	TIGRFAMs:TIGR02130	EnsemblPlantsGene:TraesCS4B01G226100	EnsemblPlants:TraesCS4B01G226100.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:472485950..472493505

Molecular Weight (calculated)

35569.4 Da

IEP (calculated)

4.839

GRAVY (calculated)

-0.082

Length

326 amino acids

Sequence
(BLAST)

001: MLSLRAPPRT FSPSPWRRRG RLDGFAAPRC VSAAPPATTL ETATARPAGV SFPILVNGCT GKMGVSVAEA ATSRGLHLVP VSFSSRENLD KTIQIGDVDV
101: EIYGPSARED VLSSVIDEFP DVVVVDYTAP NSVNSNAELY CKLGVPFVMG TTGGDQQLLY KSVQDSNNYA LISPQMGKQV VAFLAAMETI AEQFPGAFSG
201: YRLEVLESHQ AGKLDTSGTA KAVIACFEKL GAVFDMDRMV KIRDPEQQLY MVGVPEEHIE GHAFHLYHLT SPDDSVSFEF QHNVCGRSIY AEGSVDAAVF
301: LYKKVQSMDP KRIYDMIDVL QEGDMW

Best Arabidopsis Sequence Match ( AT2G44040.1 )
(BLAST)

001: MATNGLMASS SVFLHRPRIA FASRTNQTVG KYGKGRVSFM GIGTRRLPVV LSMTAMADSG EEAVKSVLPG NGISIMVNGC SGKMGKAVIK AADSAGVNIV
101: PISFGSAGED GQRVEVCGKE ITVHGPTERE KVLSSVFEKH PELIVVDYTI PSAVNDNAEL YSKVGVPFVM GTTGGDRNKL YETVEEAKIY AVISPQMGKQ
201: VVAFLAAMEI MAEQFPGAFS GYSLDVMESH QASKLDASGT AKAVISCFQE LGVSYDMDQI QLIRDPKQQV EMVGVPEEHI SGHAFHLYHL TSPDETVSFE
301: FQHNVCGRSI YAEGTVDAVL FLAKKIRLKA DQRIYNMIDV LREGNMR

Arabidopsis Description

DAPB14-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80574]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.