Factsheet for PGSC0003DMT400073601

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001820
PGSC0003DMT400036071

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44040.1	PGSC0003DMT400001820	AT3G20310.1	21798944
AT2G44040.1	PGSC0003DMT400036071	AT3G20310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g098380.2.1	Tomato	plastid	95.48	95.48
KRH06536	Soybean	cytosol	46.99	81.68
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	68.67	65.33
CDY30450	Canola	plastid	66.27	64.71
Bra037671.1-P	Field mustard	plastid	65.96	64.41
CDX83447	Canola	plastid	67.47	64.37
AT2G44040.1	Thale cress	plastid	67.17	64.27
GSMUA_Achr4P25630_001	Banana	mitochondrion	57.23	64.19
Bra000338.1-P	Field mustard	plastid	67.17	64.08
CDX95582	Canola	plastid	66.87	63.79
CDY23412	Canola	plastid	66.27	63.4
AT3G59890.1	Thale cress	plastid	65.96	62.75
KRH47978	Soybean	mitochondrion	64.76	62.5
GSMUA_Achr1P02550_001	Banana	plastid	62.05	62.24
Os03t0245100-01	Rice	mitochondrion	57.83	59.08
EER95181	Sorghum	mitochondrion	56.93	57.98
TraesCS4D01G226800.1	Wheat	mitochondrion	56.63	57.67
TraesCS4B01G226100.1	Wheat	mitochondrion	56.33	57.36
OQU80721	Sorghum	plastid	59.04	57.14
Os02t0436400-01	Rice	plastid	59.04	57.14
TraesCS4A01G069000.2	Wheat	mitochondrion	55.72	56.57
Zm00001d049956_P002	Maize	plastid	58.13	56.27
TraesCS1A01G102500.1	Wheat	plastid	56.93	55.43
Zm00001d047935_P003	Maize	plasma membrane	54.82	55.32
TraesCS1D01G094400.1	Wheat	plastid	56.63	55.13
HORVU4Hr1G063600.3	Barley	mitochondrion	54.52	53.08
HORVU1Hr1G021120.1	Barley	mitochondrion, plastid	56.33	46.29
TraesCS1B01G113300.2	Wheat	plastid	42.17	38.57
KRH06535	Soybean	mitochondrion, plastid	16.87	36.84
HORVU4Hr1G073970.1	Barley	cytosol	8.13	34.18

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.3.2	InterPro:DHDPR_bac
InterPro:DapB_C	InterPro:DapB_N	InterPro:Dihydrodipicolinate_Rdtase_pln	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008839	GO:GO:0009058	GO:GO:0009089
GO:GO:0009987	GO:GO:0055114	GO:GO:0070402	UniProt:M1CSB5	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01113
PFAM:PF05173	EnsemblPlantsGene:PGSC0003DMG400028592	PGSC:PGSC0003DMG400028592	EnsemblPlants:PGSC0003DMT400073601	PANTHER:PTHR20836	PANTHER:PTHR20836:SF4
SUPFAM:SSF51735	TIGRFAMs:TIGR02130	UniParc:UPI0002954214	:	:	:

Description

Dihydrodipicolinate reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400028592]

Coordinates

chr1:-:76023594..76029271

Molecular Weight (calculated)

36150.7 Da

IEP (calculated)

5.924

GRAVY (calculated)

-0.041

Length

332 amino acids

Sequence
(BLAST)

001: MWAVIKVPVY INGGGVRYSS SSKNGCNSFV RGRKYSVKMC STPGQNVQVS VKSKIEPLPI MVNGCTGKMG RAVLEASISA GLQPVPICFG GPEDEGKTVE
101: AGGKEIIVHG PSDRENILSS VFEEHPNLIV VDYTLPAAVN DNAELYCKVG VPFVMGTTGG DREKLYKTVA DSKVYAVISP QMGKQVVAFL TAMEIMAEQF
201: PGAFSGYSLQ VMESHQASKL DTSGTAKAVI SCFEKLGVSF DLDEVQLIRD PVQQVEMVGV PEEYLLGHAF HMYHLTSPDG TVSFEFQHNV CGRSIYAEGT
301: VDAILFLAKK VKLKEEKQIY DMIDVLREGN MR

Best Arabidopsis Sequence Match ( AT2G44040.1 )
(BLAST)

001: MATNGLMASS SVFLHRPRIA FASRTNQTVG KYGKGRVSFM GIGTRRLPVV LSMTAMADSG EEAVKSVLPG NGISIMVNGC SGKMGKAVIK AADSAGVNIV
101: PISFGSAGED GQRVEVCGKE ITVHGPTERE KVLSSVFEKH PELIVVDYTI PSAVNDNAEL YSKVGVPFVM GTTGGDRNKL YETVEEAKIY AVISPQMGKQ
201: VVAFLAAMEI MAEQFPGAFS GYSLDVMESH QASKLDASGT AKAVISCFQE LGVSYDMDQI QLIRDPKQQV EMVGVPEEHI SGHAFHLYHL TSPDETVSFE
301: FQHNVCGRSI YAEGTVDAVL FLAKKIRLKA DQRIYNMIDV LREGNMR

Arabidopsis Description

DAPB14-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80574]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.