Factsheet for TraesCS1D01G094400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G542700.1
TraesCS2B01G572500.1
TraesCS2D01G543900.1
TraesCS6A01G131200.1
TraesCS6A01G171900.1
TraesCS6B01G159600.1
TraesCS6B01G199800.1
TraesCS6D01G121100.1
TraesCS6D01G161300.1
TraesCS7A01G436400.1
TraesCS7B01G335700.1
TraesCS7D01G426700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44040.1	TraesCS2A01G542700.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS2B01G572500.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS2D01G543900.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6A01G131200.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6A01G171900.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6B01G159600.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6B01G199800.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6D01G121100.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS6D01G161300.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS7A01G436400.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS7B01G335700.1	AT3G20310.1	21798944
AT2G44040.1	TraesCS7D01G426700.1	AT3G20310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G102500.1	Wheat	plastid	97.36	97.36
Os02t0436400-01	Rice	plastid	84.16	83.67
OQU80721	Sorghum	plastid	82.4	81.92
Zm00001d049956_P002	Maize	plastid	80.35	79.88
KRH06536	Soybean	cytosol	43.11	76.96
HORVU4Hr1G073970.1	Barley	cytosol	17.6	75.95
TraesCS1B01G113300.2	Wheat	plastid	73.9	69.42
GSMUA_Achr4P25630_001	Banana	mitochondrion	58.06	66.89
GSMUA_Achr1P02550_001	Banana	plastid	64.52	66.47
TraesCS4D01G226800.1	Wheat	mitochondrion	58.36	61.04
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	61.0	59.6
KRH47978	Soybean	mitochondrion	58.06	57.56
PGSC0003DMT400073601	Potato	plastid	55.13	56.63
Solyc01g098380.2.1	Tomato	plastid	53.96	55.42
CDY30450	Canola	plastid	54.84	55.0
Bra037671.1-P	Field mustard	plastid	54.55	54.71
AT3G59890.1	Thale cress	plastid	55.72	54.44
AT2G44040.1	Thale cress	plastid	54.84	53.89
CDX95582	Canola	plastid	54.25	53.16
CDX83447	Canola	plastid	54.25	53.16
Bra000338.1-P	Field mustard	plastid	54.25	53.16
CDY23412	Canola	plastid	53.96	53.03
KRH06535	Soybean	mitochondrion, plastid	14.96	33.55

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.3.2	InterPro:DHDPR_bac
InterPro:DapB_C	InterPro:DapB_N	InterPro:Dihydrodipicolinate_Rdtase_pln	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008839	GO:GO:0009058	GO:GO:0009089
GO:GO:0009987	GO:GO:0055114	GO:GO:0070402	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01113	PFAM:PF05173
PANTHER:PTHR20836	PANTHER:PTHR20836:SF3	SUPFAM:SSF51735	TIGRFAMs:TIGR02130	EnsemblPlantsGene:TraesCS1D01G094400	EnsemblPlants:TraesCS1D01G094400.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:80018977..80037888

Molecular Weight (calculated)

37024.7 Da

IEP (calculated)

6.901

GRAVY (calculated)

-0.016

Length

341 amino acids

Sequence
(BLAST)

001: MLSAAFAVHP AAVAPRLHSV RQRQQFCAPI GTATPRRRLP VAMLSVTNAV TTQSRESAPA APRKLSFPIL VNSCTGKMGK SVAEAAVSAG LQLVPVSFSA
101: IEVPDGKLNI CDRDIHIHDP SESERILRSI AKDYPDMIVV DYTVPDAVNA NAELYCKLGL PFVMGTTGGN RQLLNKTVQD ANVYAVISPQ MGKQVVAFLA
201: AMEIMAEKFP GAFAGYKLEV MESHQATKLD VSGTAKAVIS CFQKLGVSFD LNEVNLVRDP EEQLAIVGVP EEHLGGHAFH NYHLTSPDET VSFEFQHNVC
301: GRSIYAEGTV DAAMFLHTKI RSGADKKLYD MIDVLREGNM R

Best Arabidopsis Sequence Match ( AT3G59890.1 )
(BLAST)

001: MAANGLMAAS SVFLHRPVHP HFSFSSRTNQ MVPLGFKGRV SFIGNVKRCF PVVLSMGKSE TFEEAGNSVA PGNGISIMVN GCSGKMGKAV IKAADSAGVN
101: IVPTSFGSVE EAGQTVEVCG KEILVHGPTE REKVLSSVFE KYPELIVVDY TIPSAVNDNA ELYGKVGVPF VMGTTGGDRT RLYKTVEESK IYAVISPQMG
201: KQVVAFLAAM EIMSEQFPGA FAGYSLEVME SHQASKLDAS GTAKAVISCF QKLGVSYDMD QIQLIRDPKQ QIEVVGVPEE HVSGHAFHLY HLTSPDKTVS
301: FEFQHNVCGR SIYAEGTVDA VLFLAKKIRS KAEKRIYNMI DVLREGNMR

Arabidopsis Description

DAPB24-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LB01]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.